Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 6928
Gene Symbol: HNF1B
HNF1B
0.030 Biomarker disease BEFREE A strong significant statistical difference between BA and NC group (P<0.0001) with regard to Hnf1β and FoxA2 immunoexpression was evident. 29406331 2019
Entrez Id: 6928
Gene Symbol: HNF1B
HNF1B
0.030 GeneticVariation disease BEFREE Hepatic phenotypes of HNF1B gene mutations: a case of neonatal cholestasis requiring portoenterostomy and literature review. 25741167 2015
Entrez Id: 6928
Gene Symbol: HNF1B
HNF1B
0.030 GeneticVariation disease BEFREE In this report, we found a novel missense mutation in the HNF-1 beta gene in a patient with neonatal cholestasis and liver dysfunction together with the common features of MODY5. 15001636 2004
Entrez Id: 92086
Gene Symbol: GGTLC1
GGTLC1
0.020 Biomarker disease BEFREE Parameters showing a significant difference between BA (n = 166) and non-BA (n = 316) patients were analyzed by logistic regression to predict the occurrence of BA, and then a nomogram scoring system was designed and validated in another cohort that included 190 cases of NC.A prediction diagnostic criterion with parameters including direct bilirubin, total bilirubin, globulin, albumin, gamma glutamyl transpeptidase, cholesterol, total bile acid, hepatobiliary scintigraphy, birth weight, and stool color was established; the sensitivity and specificity of this diagnostic criterion was 89% and 84%, respectively. 30732123 2019
Entrez Id: 102724197
Gene Symbol: LOC102724197
LOC102724197
0.020 Biomarker disease BEFREE Parameters showing a significant difference between BA (n = 166) and non-BA (n = 316) patients were analyzed by logistic regression to predict the occurrence of BA, and then a nomogram scoring system was designed and validated in another cohort that included 190 cases of NC.A prediction diagnostic criterion with parameters including direct bilirubin, total bilirubin, globulin, albumin, gamma glutamyl transpeptidase, cholesterol, total bile acid, hepatobiliary scintigraphy, birth weight, and stool color was established; the sensitivity and specificity of this diagnostic criterion was 89% and 84%, respectively. 30732123 2019
Entrez Id: 5265
Gene Symbol: SERPINA1
SERPINA1
0.020 Biomarker disease BEFREE The incidence of AAT deficiency is very low in Iran; therefore, screening for AAT is not recommended for patients with neonatal cholestasis in Iran. 26006201 2015
Entrez Id: 5265
Gene Symbol: SERPINA1
SERPINA1
0.020 Biomarker disease BEFREE alpha1AT deficiency is not an important cause of neonatal cholestasis and childhood liver diseases in Malaysian children. 17688648 2007
Entrez Id: 102724197
Gene Symbol: LOC102724197
LOC102724197
0.020 AlteredExpression disease BEFREE ARC syndrome (OMIM 208085) is an autosomal recessive multisystem disorder characterized by neurogenic arthrogryposis multiplex congenita, renal tubular dysfunction and neonatal cholestasis with bile duct hypoplasia and low gamma glutamyl transpeptidase (gGT) activity.Platelet dysfunction is common. 15052268 2004
Entrez Id: 92086
Gene Symbol: GGTLC1
GGTLC1
0.020 AlteredExpression disease BEFREE ARC syndrome (OMIM 208085) is an autosomal recessive multisystem disorder characterized by neurogenic arthrogryposis multiplex congenita, renal tubular dysfunction and neonatal cholestasis with bile duct hypoplasia and low gamma glutamyl transpeptidase (gGT) activity.Platelet dysfunction is common. 15052268 2004
Entrez Id: 90865
Gene Symbol: IL33
IL33
0.010 Biomarker disease BEFREE Clinical Value of Serum Interleukin-33 Biomarker in Infants with Neonatal Cholestasis. 31764415 2020
Entrez Id: 174
Gene Symbol: AFP
AFP
0.010 AlteredExpression disease BEFREE MAS should be considered part of the differential diagnosis of neonatal cholestasis and affected children should be closely monitored for the development of hepatic lesions with regular liver ultrasound and alpha fetoprotein level. 30628989 2019
Entrez Id: 3170
Gene Symbol: FOXA2
FOXA2
0.010 Biomarker disease BEFREE A strong significant statistical difference between BA and NC group (P<0.0001) with regard to Hnf1β and FoxA2 immunoexpression was evident. 29406331 2019
Entrez Id: 407026
Gene Symbol: MIR29C
MIR29C
0.010 AlteredExpression disease BEFREE The expression of miR-29c was determined in 15 pairs of peripheral blood samples from infants with biliary atresia (BA) and infants with non-BA neonatal cholestasis using quantitative real-time PCR. 30906331 2019
Entrez Id: 290
Gene Symbol: ANPEP
ANPEP
0.010 Biomarker disease BEFREE CD13-specific autoantibodies were found in mothers of infants with neonatal cholestasis, but not in mothers of infants without cholestasis and healthy blood donors, and were associated with HCMV seropositivity. 27203397 2017
Entrez Id: 9971
Gene Symbol: NR1H4
NR1H4
0.010 GeneticVariation disease BEFREE Here we report four individuals from two unrelated families with neonatal cholestasis and mutations in NR1H4, which encodes the farnesoid X receptor (FXR), a bile acid-activated nuclear hormone receptor that regulates bile acid metabolism. 26888176 2016
Entrez Id: 383
Gene Symbol: ARG1
ARG1
0.010 Biomarker disease BEFREE In contrast to other urea cycle defects, arginase 1 deficiency usually does not cause catastrophic neonatal hyperammonemia but rather presents with progressive neurological symptoms including seizures and spastic paraplegia in the first years of life and hepatic pathology, such as neonatal cholestasis, acute liver failure, or liver fibrosis. 26123990 2015
Entrez Id: 653590
Gene Symbol: GGTLC5P
GGTLC5P
0.010 AlteredExpression disease BEFREE Nevertheless, this case indicates that ARC syndrome cannot be excluded from the differential diagnosis of neonatal cholestasis even if high GGT activity is found. 24782640 2014
Entrez Id: 2678
Gene Symbol: GGT1
GGT1
0.010 AlteredExpression disease BEFREE Nevertheless, this case indicates that ARC syndrome cannot be excluded from the differential diagnosis of neonatal cholestasis even if high GGT activity is found. 24782640 2014
Entrez Id: 729838
Gene Symbol: GGTLC4P
GGTLC4P
0.010 AlteredExpression disease BEFREE Nevertheless, this case indicates that ARC syndrome cannot be excluded from the differential diagnosis of neonatal cholestasis even if high GGT activity is found. 24782640 2014
Entrez Id: 728226
Gene Symbol: GGTLC3
GGTLC3
0.010 AlteredExpression disease BEFREE Nevertheless, this case indicates that ARC syndrome cannot be excluded from the differential diagnosis of neonatal cholestasis even if high GGT activity is found. 24782640 2014
Entrez Id: 728441
Gene Symbol: GGT2
GGT2
0.010 AlteredExpression disease BEFREE Nevertheless, this case indicates that ARC syndrome cannot be excluded from the differential diagnosis of neonatal cholestasis even if high GGT activity is found. 24782640 2014
Entrez Id: 84565
Gene Symbol: LCS1
LCS1
0.010 GeneticVariation disease BEFREE To investigate the prognosis of liver disease in Aagenaes syndrome (lymphoedema cholestasis syndrome 1 (LCS1)), which is an autosomal recessive inherited syndrome consisting of neonatal cholestasis with intermittent cholestatic episodes in childhood into adulthood and development of lymphoedema. 16635916 2006
Entrez Id: 1593
Gene Symbol: CYP27A1
CYP27A1
0.010 GeneticVariation disease BEFREE Fetal and neonatal deaths among siblings of patients with CTX have been reported previously and the present case supports the contention that reduced activity of the sterol 27-hydroxylase may predispose to the development of neonatal cholestasis. 15795599 2005
Entrez Id: 80270
Gene Symbol: HSD3B7
HSD3B7
0.010 GeneticVariation disease BEFREE We conclude that a diverse spectrum of mutations in the HSD3B7 gene underlies this rare form of neonatal cholestasis. 12679481 2003