Source: ALL
Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs12411988
rs12411988
REEP3
C 0.800 GeneticVariation GWASCAT Gene expression data on 68 JIA cases and 23 local controls showed cis expression quantitative trait locus associations for C3orf1 SNP rs4688011 (P = 0.024 or P = 0.034, depending on the probe set) and JMJD1C SNPs rs6479891 and rs12411988 (P = 0.01 or P = 0.04, depending on the probe set and P = 0.008, respectively). 22354554

2012
dbSNP: rs12411988
rs12411988
REEP3
C 0.800 GeneticVariation GWASDB Gene expression data on 68 JIA cases and 23 local controls showed cis expression quantitative trait locus associations for C3orf1 SNP rs4688011 (P = 0.024 or P = 0.034, depending on the probe set) and JMJD1C SNPs rs6479891 and rs12411988 (P = 0.01 or P = 0.04, depending on the probe set and P = 0.008, respectively). 22354554

2012
dbSNP: rs12719740
rs12719740
FAM169B
T 0.800 GeneticVariation GWASDB Genome-wide association analysis of juvenile idiopathic arthritis identifies a new susceptibility locus at chromosomal region 3q13. 22354554

2012
dbSNP: rs12719740
rs12719740
FAM169B
T 0.800 GeneticVariation GWASCAT Genome-wide association analysis of juvenile idiopathic arthritis identifies a new susceptibility locus at chromosomal region 3q13. 22354554

2012
dbSNP: rs4688011
rs4688011
TIMMDC1
T 0.800 GeneticVariation GWASCAT Gene expression data on 68 JIA cases and 23 local controls showed cis expression quantitative trait locus associations for C3orf1 SNP rs4688011 (P = 0.024 or P = 0.034, depending on the probe set) and JMJD1C SNPs rs6479891 and rs12411988 (P = 0.01 or P = 0.04, depending on the probe set and P = 0.008, respectively). 22354554

2012
dbSNP: rs4688011
rs4688011
TIMMDC1
T 0.800 GeneticVariation GWASDB Gene expression data on 68 JIA cases and 23 local controls showed cis expression quantitative trait locus associations for C3orf1 SNP rs4688011 (P = 0.024 or P = 0.034, depending on the probe set) and JMJD1C SNPs rs6479891 and rs12411988 (P = 0.01 or P = 0.04, depending on the probe set and P = 0.008, respectively). 22354554

2012
dbSNP: rs6479891
rs6479891
JMJD1C
T 0.800 GeneticVariation GWASCAT Gene expression data on 68 JIA cases and 23 local controls showed cis expression quantitative trait locus associations for C3orf1 SNP rs4688011 (P = 0.024 or P = 0.034, depending on the probe set) and JMJD1C SNPs rs6479891 and rs12411988 (P = 0.01 or P = 0.04, depending on the probe set and P = 0.008, respectively). 22354554

2012
dbSNP: rs6479891
rs6479891
JMJD1C
T 0.800 GeneticVariation GWASDB Gene expression data on 68 JIA cases and 23 local controls showed cis expression quantitative trait locus associations for C3orf1 SNP rs4688011 (P = 0.024 or P = 0.034, depending on the probe set) and JMJD1C SNPs rs6479891 and rs12411988 (P = 0.01 or P = 0.04, depending on the probe set and P = 0.008, respectively). 22354554

2012
dbSNP: rs12046117
rs12046117
VTCN1
0.800 GeneticVariation GWASDB Identification of a novel susceptibility locus for juvenile idiopathic arthritis by genome-wide association analysis. 19116933

2009
dbSNP: rs12046117
rs12046117
VTCN1
0.800 GeneticVariation GWASCAT Identification of a novel susceptibility locus for juvenile idiopathic arthritis by genome-wide association analysis. 19116933

2009
dbSNP: rs2395148
rs2395148
TSBP1 ; TSBP1-AS1
0.800 GeneticVariation GWASCAT Association of the TRAF1-C5 locus on chromosome 9 with juvenile idiopathic arthritis. 18576341

2008
dbSNP: rs2395148
rs2395148
TSBP1 ; TSBP1-AS1
0.800 GeneticVariation GWASDB Association of the TRAF1-C5 locus on chromosome 9 with juvenile idiopathic arthritis. 18576341

2008
dbSNP: rs953387
rs953387 		T 0.700 GeneticVariation GWASCAT The CXCR4 locus on 2q22.1 was found to be significantly associated with JIA, peaking at SNP rs953387. 27005825

2016
dbSNP: rs10822050
rs10822050 		C 0.700 GeneticVariation GWASCAT Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases. 26301688

2015
dbSNP: rs10988542
rs10988542
FNBP1
C 0.700 GeneticVariation GWASCAT Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases. 26301688

2015
dbSNP: rs11145763
rs11145763
CARD9
C 0.700 GeneticVariation GWASCAT Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases. 26301688

2015
dbSNP: rs114846446
rs114846446
LINC01250
A 0.700 GeneticVariation GWASCAT Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases. 26301688

2015
dbSNP: rs11580078
rs11580078
IL23R ; C1orf141
G 0.700 GeneticVariation GWASCAT Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases. 26301688

2015
dbSNP: rs117372389
rs117372389
NKD1
T 0.700 GeneticVariation GWASCAT Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases. 26301688

2015
dbSNP: rs11741255
rs11741255
IRF1-AS1
A 0.700 GeneticVariation GWASCAT Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases. 26301688

2015
dbSNP: rs11839053
rs11839053 		C 0.700 GeneticVariation GWASCAT Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases. 26301688

2015
dbSNP: rs12232497
rs12232497 		C 0.700 GeneticVariation GWASCAT Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases. 26301688

2015
dbSNP: rs1250563
rs1250563
ZMIZ1
C 0.700 GeneticVariation GWASCAT Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases. 26301688

2015
dbSNP: rs12598357
rs12598357 		G 0.700 GeneticVariation GWASCAT Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases. 26301688

2015
dbSNP: rs12863738
rs12863738 		T 0.700 GeneticVariation GWASCAT Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases. 26301688

2015