NLGN4X, neuroligin 4 X-linked, 57502

N. diseases: 45; N. variants: 18
Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs12009217
rs12009217
Entrez Id: 57502
Gene Symbol: NLGN4X
NLGN4X
CUI: C0036341
Disease:
Schizophrenia
0.700 GeneticVariation GWASCAT Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection. 29483656 2018
dbSNP: rs12845396
rs12845396
Entrez Id: 57502
Gene Symbol: NLGN4X
NLGN4X
CUI: C0036341
Disease:
Schizophrenia
T 0.700 GeneticVariation GWASCAT Biological insights from 108 schizophrenia-associated genetic loci. 25056061 2014
dbSNP: rs1569118680
rs1569118680
Entrez Id: 57502
Gene Symbol: NLGN4X
NLGN4X
CUI: C3501611
Disease:
Mental Retardation, X-Linked Nonsyndromic
G 0.700 CausalMutation CLINVAR
dbSNP: rs1569118680
rs1569118680
Entrez Id: 57502
Gene Symbol: NLGN4X
NLGN4X
CUI: C1845539
Disease:
AUTISM, X-LINKED, SUSCEPTIBILITY TO, 2 (finding)
G 0.700 SusceptibilityMutation CLINVAR
dbSNP: rs1569118853
rs1569118853
Entrez Id: 57502
Gene Symbol: NLGN4X
NLGN4X
CUI: C1845334
Disease:
ASPERGER SYNDROME, X-LINKED, SUSCEPTIBILITY TO, 2 (finding)
CA 0.700 SusceptibilityMutation CLINVAR
dbSNP: rs1569118853
rs1569118853
Entrez Id: 57502
Gene Symbol: NLGN4X
NLGN4X
CUI: C1845539
Disease:
AUTISM, X-LINKED, SUSCEPTIBILITY TO, 2 (finding)
CA 0.700 SusceptibilityMutation CLINVAR
dbSNP: rs749477993
rs749477993
Entrez Id: 57502
Gene Symbol: NLGN4X
NLGN4X
CUI: C0009402
Disease:
Colorectal Carcinoma
0.700 GeneticVariation UNIPROT
dbSNP: rs756651509
rs756651509
Entrez Id: 57502
Gene Symbol: NLGN4X
NLGN4X
CUI: C1845539
Disease:
AUTISM, X-LINKED, SUSCEPTIBILITY TO, 2 (finding)
A 0.700 CausalMutation CLINVAR
dbSNP: rs751945904
rs751945904
Entrez Id: 57502
Gene Symbol: NLGN4X
NLGN4X
CUI: C0004352
Disease:
Autistic Disorder
0.020 GeneticVariation BEFREE Human neurons carrying the syndromic autism mutation NLGN4-R704C also formed more excitatory synapses but with increased functional synaptic transmission due to a postsynaptic mechanism, while genetic loss of NLGN4 did not significantly affect synapses in the human neurons analyzed. 31257103 2019
dbSNP: rs751945904
rs751945904
Entrez Id: 57502
Gene Symbol: NLGN4X
NLGN4X
CUI: C0004352
Disease:
Autistic Disorder
0.020 GeneticVariation BEFREE Here, we analysed the effect of a single amino-acid substitution (R704C) that targets a conserved arginine residue in the cytoplasmic sequence of all neuroligins, and that was associated with autism in neuroligin-4. 21642956 2011
dbSNP: rs3747333
rs3747333
Entrez Id: 57502
Gene Symbol: NLGN4X
NLGN4X
CUI: C0524528
Disease:
Pervasive Development Disorder
0.010 GeneticVariation BEFREE Analysis of the SNP rs3747333 and rs3747334 in NLGN4X gene in autism spectrum disorder: a meta-analysis. 31139237 2019
dbSNP: rs3747333
rs3747333
Entrez Id: 57502
Gene Symbol: NLGN4X
NLGN4X
CUI: C1510586
Disease:
Autism Spectrum Disorders
0.010 GeneticVariation BEFREE Analysis of the SNP rs3747333 and rs3747334 in NLGN4X gene in autism spectrum disorder: a meta-analysis. 31139237 2019
dbSNP: rs3747334
rs3747334
Entrez Id: 57502
Gene Symbol: NLGN4X
NLGN4X
CUI: C1510586
Disease:
Autism Spectrum Disorders
0.010 GeneticVariation BEFREE Analysis of the SNP rs3747333 and rs3747334 in NLGN4X gene in autism spectrum disorder: a meta-analysis. 31139237 2019
dbSNP: rs3747334
rs3747334
Entrez Id: 57502
Gene Symbol: NLGN4X
NLGN4X
CUI: C0524528
Disease:
Pervasive Development Disorder
0.010 GeneticVariation BEFREE Analysis of the SNP rs3747333 and rs3747334 in NLGN4X gene in autism spectrum disorder: a meta-analysis. 31139237 2019
dbSNP: rs5961397
rs5961397
Entrez Id: 57502
Gene Symbol: NLGN4X
NLGN4X
CUI: C0019569
Disease:
Hirschsprung Disease
0.010 GeneticVariation BEFREE Several SNPs were significantly associated with altered risk of HD in the Chinese Han population, including rs1421589 within <i>NRXN1</i>, rs11795613 and rs4844285 within <i>NLGN3,</i> as well as rs5961397, rs7157669 and rs724373 within <i>NLGX4X</i> (all P<0.05). 29622757 2018
dbSNP: rs1882260
rs1882260
Entrez Id: 57502
Gene Symbol: NLGN4X
NLGN4X
CUI: C0004352
Disease:
Autistic Disorder
0.010 GeneticVariation BEFREE According to both the European and the Italian control groups, a 6-marker haplotype on <i>NLGN4X</i> (rs6638575(G), rs3810688(T), rs3810687(G), rs3810686(C), rs5916269(G), rs1882260(T)) was associated with autism (odd ratio = 3.58, <i>p</i>-value = 2.58 × 10<sup>-6</sup> for the European controls; odds ratio = 2.42, <i>p</i>-value = 6.33 × 10<sup>-3</sup> for the Italian controls). 27782075 2016
dbSNP: rs3810686
rs3810686
Entrez Id: 57502
Gene Symbol: NLGN4X
NLGN4X
CUI: C0004352
Disease:
Autistic Disorder
0.010 GeneticVariation BEFREE According to both the European and the Italian control groups, a 6-marker haplotype on <i>NLGN4X</i> (rs6638575(G), rs3810688(T), rs3810687(G), rs3810686(C), rs5916269(G), rs1882260(T)) was associated with autism (odd ratio = 3.58, <i>p</i>-value = 2.58 × 10<sup>-6</sup> for the European controls; odds ratio = 2.42, <i>p</i>-value = 6.33 × 10<sup>-3</sup> for the Italian controls). 27782075 2016
dbSNP: rs3810687
rs3810687
Entrez Id: 57502
Gene Symbol: NLGN4X
NLGN4X
CUI: C0004352
Disease:
Autistic Disorder
0.010 GeneticVariation BEFREE According to both the European and the Italian control groups, a 6-marker haplotype on <i>NLGN4X</i> (rs6638575(G), rs3810688(T), rs3810687(G), rs3810686(C), rs5916269(G), rs1882260(T)) was associated with autism (odd ratio = 3.58, <i>p</i>-value = 2.58 × 10<sup>-6</sup> for the European controls; odds ratio = 2.42, <i>p</i>-value = 6.33 × 10<sup>-3</sup> for the Italian controls). 27782075 2016
dbSNP: rs3810688
rs3810688
Entrez Id: 57502
Gene Symbol: NLGN4X
NLGN4X
CUI: C0004352
Disease:
Autistic Disorder
0.010 GeneticVariation BEFREE According to both the European and the Italian control groups, a 6-marker haplotype on <i>NLGN4X</i> (rs6638575(G), rs3810688(T), rs3810687(G), rs3810686(C), rs5916269(G), rs1882260(T)) was associated with autism (odd ratio = 3.58, <i>p</i>-value = 2.58 × 10<sup>-6</sup> for the European controls; odds ratio = 2.42, <i>p</i>-value = 6.33 × 10<sup>-3</sup> for the Italian controls). 27782075 2016
dbSNP: rs5916269
rs5916269
Entrez Id: 57502
Gene Symbol: NLGN4X
NLGN4X
CUI: C0004352
Disease:
Autistic Disorder
0.010 GeneticVariation BEFREE According to both the European and the Italian control groups, a 6-marker haplotype on <i>NLGN4X</i> (rs6638575(G), rs3810688(T), rs3810687(G), rs3810686(C), rs5916269(G), rs1882260(T)) was associated with autism (odd ratio = 3.58, <i>p</i>-value = 2.58 × 10<sup>-6</sup> for the European controls; odds ratio = 2.42, <i>p</i>-value = 6.33 × 10<sup>-3</sup> for the Italian controls). 27782075 2016
dbSNP: rs6638575
rs6638575
Entrez Id: 57502
Gene Symbol: NLGN4X
NLGN4X
CUI: C0004352
Disease:
Autistic Disorder
0.010 GeneticVariation BEFREE According to both the European and the Italian control groups, a 6-marker haplotype on <i>NLGN4X</i> (rs6638575(G), rs3810688(T), rs3810687(G), rs3810686(C), rs5916269(G), rs1882260(T)) was associated with autism (odd ratio = 3.58, <i>p</i>-value = 2.58 × 10<sup>-6</sup> for the European controls; odds ratio = 2.42, <i>p</i>-value = 6.33 × 10<sup>-3</sup> for the Italian controls). 27782075 2016
dbSNP: rs751945904
rs751945904
Entrez Id: 57502
Gene Symbol: NLGN4X
NLGN4X
CUI: C1510586
Disease:
Autism Spectrum Disorders
0.010 GeneticVariation BEFREE Point mutations have been identified in X-linked Neuroligin (NLGN) 3 and 4X genes in patients with ASDs and all of these reside in their extracellular domains except for a single point mutation in the cytoplasmic domain of NLGN4X in which an arginine is mutated to a cysteine (R704C). 25675530 2015
dbSNP: rs3747333
rs3747333
Entrez Id: 57502
Gene Symbol: NLGN4X
NLGN4X
CUI: C0004352
Disease:
Autistic Disorder
0.010 GeneticVariation BEFREE By case-control analysis, we identified the common SNPs (rs3747333 and rs3747334) in the NLGN4X gene significantly associated with risk for autism [p = 5.09E-005; OR 4.685 (95% CI 2.073-10.592)]. 24570023 2014
dbSNP: rs3747334
rs3747334
Entrez Id: 57502
Gene Symbol: NLGN4X
NLGN4X
CUI: C0004352
Disease:
Autistic Disorder
0.010 GeneticVariation BEFREE By case-control analysis, we identified the common SNPs (rs3747333 and rs3747334) in the NLGN4X gene significantly associated with risk for autism [p = 5.09E-005; OR 4.685 (95% CI 2.073-10.592)]. 24570023 2014
dbSNP: rs144093574
rs144093574
Entrez Id: 57502
Gene Symbol: NLGN4X
NLGN4X
CUI: C0004352
Disease:
Autistic Disorder
0.010 GeneticVariation BEFREE In the preliminary study of specific exons of NLGN3 and NLGN4 genes, we identified the p.K378R substitution (c.1597 A > G) in exon 5 of the NLGN4 gene in a patient who was found to have mild autism and normal IQ at 3 years of age. 19645625 2009