Source: BEFREE

Gene Disease Score gda Association Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 2303
Gene Symbol: FOXC2
FOXC2
CUI: C0025202
Disease: melanoma
melanoma
0.010 AlteredExpression BEFREE FOXC2 drives a tumor-promoting gene expression program in melanoma and is a prognostic indicator of patient response to multiple cancer therapies. 31659103

2020

Entrez Id: 1846
Gene Symbol: DUSP4
DUSP4
CUI: C0025202
Disease: melanoma
melanoma
0.010 Biomarker BEFREE Dual-specificity protein phosphatase DUSP4 regulates response to MEK inhibition in BRAF wild-type melanoma. 31839677

2020

Entrez Id: 58504
Gene Symbol: ARHGAP22
ARHGAP22
CUI: C0025202
Disease: melanoma
melanoma
0.010 PosttranslationalModification BEFREE We identified several methylation changes that can have role during melanoma progression, including hypermethylation of the promoter regions of the ARHGAP22 and NAV2 genes that are commonly altered in locally invasive primary melanomas as well as during metastasis. 31602702

2020

Entrez Id: 9801
Gene Symbol: MRPL19
MRPL19
CUI: C0025202
Disease: melanoma
melanoma
0.010 AlteredExpression BEFREE We recommend using a geometric mean of the expression of CLTA, MRPL19 and ACTB for normalization of gene expression in melanomas and a geometric mean of the expression of CASC3 and RPS2 for normalization of gene expression in melanoma cell lines. 31567589

2020

Entrez Id: 22801
Gene Symbol: ITGA11
ITGA11
CUI: C0025202
Disease: melanoma
melanoma
0.010 AlteredExpression BEFREE In human melanoma, CCN2 expression was associated with a profibrotic ITGA11-expressing subset of cancer-associated fibroblasts that negatively associated with survival. 31610176

2020

Entrez Id: 5420
Gene Symbol: PODXL
PODXL
CUI: C0025202
Disease: melanoma
melanoma
0.010 AlteredExpression BEFREE PODXL and DEL-1 expression in melanoma patients were associated with poor survival and thus can be used as prognostic markers. 31622599

2020

Entrez Id: 406932
Gene Symbol: MIR140
MIR140
CUI: C0025202
Disease: melanoma
melanoma
0.010 Biomarker BEFREE Xenograft models of melanoma were established to verify the role and molecular basis of miR-140-5p. 31385607

2020

Entrez Id: 26263
Gene Symbol: FBXO22
FBXO22
CUI: C0025202
Disease: melanoma
melanoma
0.010 Biomarker BEFREE In conclusion, FBXO22 promoted the migration and invasion of tumor cells and melanoma angiogenesis via HIF-1α upregulation. 30887251

2020

Entrez Id: 55626
Gene Symbol: AMBRA1
AMBRA1
CUI: C0025202
Disease: melanoma
melanoma
0.010 AlteredExpression BEFREE Peritumoral AMBRA1 expression was evaluated in a retrospective discovery cohort of 76 AJCC stage I melanomas. 31056744

2020

Entrez Id: 4176
Gene Symbol: MCM7
MCM7
CUI: C0025202
Disease: melanoma
melanoma
0.010 Biomarker BEFREE MCM7 might mediate the AKT1/mTOR signaling pathway to influence the progress of melanoma. 31535400

2020

Entrez Id: 6187
Gene Symbol: RPS2
RPS2
CUI: C0025202
Disease: melanoma
melanoma
0.010 AlteredExpression BEFREE We recommend using a geometric mean of the expression of CLTA, MRPL19 and ACTB for normalization of gene expression in melanomas and a geometric mean of the expression of CASC3 and RPS2 for normalization of gene expression in melanoma cell lines. 31567589

2020

Entrez Id: 83667
Gene Symbol: SESN2
SESN2
CUI: C0025202
Disease: melanoma
melanoma
0.010 AlteredExpression BEFREE Taken together, our findings illustrated that the upregulation of Sesn2 in response to suspension stress plays a protective role in melanoma against anoikis by detoxifying oxidative stress. 31476315

2020

Entrez Id: 100528016
Gene Symbol: TMX2-CTNND1
TMX2-CTNND1
CUI: C0025202
Disease: melanoma
melanoma
0.010 PosttranslationalModification BEFREE Proteomic analysis reveals a role for RSK in p120-catenin phosphorylation and melanoma cell-cell adhesion. 31678930

2020

Entrez Id: 55553
Gene Symbol: SOX6
SOX6
CUI: C0025202
Disease: melanoma
melanoma
0.010 Biomarker BEFREE We further demonstrate melanoma and PD-inferred gene expression to overlap across tissues (correlation: 0.14, 95% CI 0.06 to 0.22; P = 7.87 × 10<sup>-04</sup>) and highlight seven genes including PIEZO1, TRAPPC2L, and SOX6 as potential mediators of the genetic correlation between melanoma and PD. 31845298

2020

Entrez Id: 22794
Gene Symbol: CASC3
CASC3
CUI: C0025202
Disease: melanoma
melanoma
0.010 AlteredExpression BEFREE We recommend using a geometric mean of the expression of CLTA, MRPL19 and ACTB for normalization of gene expression in melanomas and a geometric mean of the expression of CASC3 and RPS2 for normalization of gene expression in melanoma cell lines. 31567589

2020

Entrez Id: 1211
Gene Symbol: CLTA
CLTA
CUI: C0025202
Disease: melanoma
melanoma
0.010 AlteredExpression BEFREE We recommend using a geometric mean of the expression of CLTA, MRPL19 and ACTB for normalization of gene expression in melanomas and a geometric mean of the expression of CASC3 and RPS2 for normalization of gene expression in melanoma cell lines. 31567589

2020

Entrez Id: 5330
Gene Symbol: PLCB2
PLCB2
CUI: C0025202
Disease: melanoma
melanoma
0.010 Biomarker BEFREE The present study was the first to demonstrate that PLCB2 is a key factor affecting melanoma proliferation and apoptosis. 31746389

2020

Entrez Id: 1629
Gene Symbol: DBT
DBT
CUI: C0025202
Disease: melanoma
melanoma
0.010 AlteredExpression BEFREE Overexpression of DBT kills all four melanoma cell lines tested regardless of the presence of BRAF<sup>V600E</sup> mutation. 31548614

2020

Entrez Id: 10404
Gene Symbol: CPQ
CPQ
CUI: C0025202
Disease: melanoma
melanoma
0.010 Biomarker BEFREE ER-aminopeptidase 1 determines the processing and presentation of an immunotherapy-relevant melanoma epitope. 31729751

2020

Entrez Id: 5580
Gene Symbol: PRKCD
PRKCD
CUI: C0025202
Disease: melanoma
melanoma
0.010 GeneticVariation BEFREE A cohort study of adults with stage IIIC-IV melanoma treated with pembrolizumab or nivolumab during May 1, 2012-February 1, 2018, at Westmead Hospital, Sydney, Australia. 31233857

2020

Entrez Id: 51693
Gene Symbol: TRAPPC2L
TRAPPC2L
CUI: C0025202
Disease: melanoma
melanoma
0.010 Biomarker BEFREE We further demonstrate melanoma and PD-inferred gene expression to overlap across tissues (correlation: 0.14, 95% CI 0.06 to 0.22; P = 7.87 × 10<sup>-04</sup>) and highlight seven genes including PIEZO1, TRAPPC2L, and SOX6 as potential mediators of the genetic correlation between melanoma and PD. 31845298

2020

Entrez Id: 114793
Gene Symbol: FMNL2
FMNL2
CUI: C0025202
Disease: melanoma
melanoma
0.010 AlteredExpression BEFREE FMNL2 expression levels in melanoma tissues were investigated by immunohistochemistry (IHC) assays. 31298385

2019

Entrez Id: 90637
Gene Symbol: ZFAND2A
ZFAND2A
CUI: C0025202
Disease: melanoma
melanoma
0.010 Biomarker BEFREE More importantly, this study unexpectedly revealed that, also in the absence of drugs, AIRAP-silencing hinders melanoma clonogenic potential and spheroid growth, promoting caspase activation and apoptotic cell death, an effect independent of AIRAPL and linked to downregulation of the antiapoptotic protein cIAP2. 31540997

2019

Entrez Id: 51393
Gene Symbol: TRPV2
TRPV2
CUI: C0025202
Disease: melanoma
melanoma
0.010 AlteredExpression BEFREE Moreover, activation of TRPV2 and TRPV4 could lead to the decline of cell viability for melanoma A2058 and A375 cells. 30881453

2019

Entrez Id: 912
Gene Symbol: CD1D
CD1D
CUI: C0025202
Disease: melanoma
melanoma
0.010 Biomarker BEFREE In addition, histologically similar tumors to anaplastic carcinoma like sarcoma and malignant melanoma revealed distinct CD1d staining patterns. 31560833

2019