Gene Disease Score gda Association Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 5728
Gene Symbol: PTEN
PTEN
Squamous cell carcinoma of the head and neck
0.800 GeneticVariation BEFREE Activation of the PI3K/AKT/mTOR pathway downstream to kinase receptors, such as EGFR, was found in 57-81% of head and neck squamous cell carcinoma (HNSCC), and was eventually associated with a loss of PTEN function. mTOR was shown to modulate cell proliferation, apoptosis, invasion, and angiogenesis. 17912526

2008

Entrez Id: 5728
Gene Symbol: PTEN
PTEN
Squamous cell carcinoma of the head and neck
0.800 GeneticVariation UNIPROT Detection of new PTEN/MMAC1 mutations in head and neck squamous cell carcinomas with loss of chromosome 10. 11801303

2002

Entrez Id: 5728
Gene Symbol: PTEN
PTEN
Squamous cell carcinoma of the head and neck
0.800 GeneticVariation CLINVAR Identifying recurrent mutations in cancer reveals widespread lineage diversity and mutational specificity. 26619011

2016

Entrez Id: 5728
Gene Symbol: PTEN
PTEN
Squamous cell carcinoma of the head and neck
0.800 GeneticVariation BEFREE We sequenced the entire coding region of the PTEN/MMAC1 gene in the remaining tumors displaying loss of heterozygosity and found one terminating mutation in a HNSCC sample. 9458098

1998

Entrez Id: 3621
Gene Symbol: ING1
ING1
Squamous cell carcinoma of the head and neck
0.710 GeneticVariation UNIPROT Of 34 informative cases of head and neck squamous cell carcinoma, 68% of tumors showed loss of heterozygosity at chromosome 13q33-34, where the ING1 gene is located. 10866301

2000

Entrez Id: 1956
Gene Symbol: EGFR
EGFR
Squamous cell carcinoma of the head and neck
0.500 GeneticVariation BEFREE We examined the relationship of EGFR ligands, EGF, transforming growth factor-alpha,and amphiregulin and the efficacy of gefitinib and cetuximab in EGFR wild-type NSCLC (n=10) and head and neck squamous cell carcinoma (n=4) cell lines. 18980991

2008

Entrez Id: 7157
Gene Symbol: TP53
TP53
Squamous cell carcinoma of the head and neck
0.500 GeneticVariation BEFREE Inverse relationship between human papillomavirus-16 infection and disruptive p53 gene mutations in squamous cell carcinoma of the head and neck. 18223210

2008

Entrez Id: 5290
Gene Symbol: PIK3CA
PIK3CA
Squamous cell carcinoma of the head and neck
0.500 GeneticVariation BEFREE We have previously reported high incidence of PIK3CA somatic mutations in head and neck squamous cell carcinoma, particularly in pharyngeal cancers. 24511546

2014

Entrez Id: 1956
Gene Symbol: EGFR
EGFR
Squamous cell carcinoma of the head and neck
0.500 GeneticVariation BEFREE Our study revealed high frequency of EGFR overexpression (66-84%), low frequency of gene amplification (10-32.5%) and absence of functional mutation in the dysplastic lesions and HNSCC samples. 23675485

2013

Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
Squamous cell carcinoma of the head and neck
0.500 GeneticVariation BEFREE To test this hypothesis, we conducted a hospital-based case-control study of 208 patients with SCCHN and 224 cancer-free control subjects to evaluate the association between p16 genotypes/haplotypes and the risk of SCCHN, using a PCR-single strand conformation polymorphism-based genotyping assay. 12101111

2002

Entrez Id: 7157
Gene Symbol: TP53
TP53
Squamous cell carcinoma of the head and neck
0.500 GeneticVariation BEFREE The results indicate that p53 gene mutations and not protein overexpression are valuable predictors for tumour recurrences and for differential diagnosis of a second primary HNSCC. 9719502

1998

Entrez Id: 5290
Gene Symbol: PIK3CA
PIK3CA
Squamous cell carcinoma of the head and neck
0.500 GeneticVariation BEFREE Tissue biopsies of 25 consecutive cases of HNSCC were tested for activating PIK3CA mutations at three mutational hotspots by real-time polymerase chain reaction. 26271341

2016

Entrez Id: 1956
Gene Symbol: EGFR
EGFR
Squamous cell carcinoma of the head and neck
0.500 GeneticVariation BEFREE Mutation status of EGFR exons 18, 19, and 21 was determined in the HNSCC tumors. 17538160

2007

Entrez Id: 7157
Gene Symbol: TP53
TP53
Squamous cell carcinoma of the head and neck
0.500 GeneticVariation BEFREE The combination of AUY922 with cisplatin, radiation and CCRT was found to be synergistic in p53 mutant HNSCC. 28143445

2017

Entrez Id: 7157
Gene Symbol: TP53
TP53
Squamous cell carcinoma of the head and neck
0.500 GeneticVariation BEFREE Surgically resected HNSCC samples with no TP53 mutations have elevated levels of miR-34a and miR-34b/b*/c, while those with TP53 mutations show no such up-regulation. miR-34b/b*/c expression is also correlated with smoking status and tumor sites. 30515607

2019

Entrez Id: 5290
Gene Symbol: PIK3CA
PIK3CA
Squamous cell carcinoma of the head and neck
0.500 GeneticVariation BEFREE We identified frequent PIK3CA mutations in patients with high-risk HNSCC confined predominantly to the oropharyngeal and sinonasal subsites; for the first time, mutation in AKT1 has been identified in HNSCC. 23852799

2014

Entrez Id: 7157
Gene Symbol: TP53
TP53
Squamous cell carcinoma of the head and neck
0.500 GeneticVariation BEFREE Our study provides for the first time evidence that individuals carrying p53 exon 4 and p53 intron 6 variant alleles are significantly protected against SCCHN, and also shows that an additional risk is conferred by the combination of p73 exon 2 G4C14-to-A4T14 and p53 intron 3 variant allele. 19426493

2009

Entrez Id: 7157
Gene Symbol: TP53
TP53
Squamous cell carcinoma of the head and neck
0.500 GeneticVariation BEFREE Forty-one surgical margins and lymph nodes from 10 cases of head and neck squamous cell carcinoma and lung carcinoma were tested for p53 mutant clones. 15073114

2004

Entrez Id: 7157
Gene Symbol: TP53
TP53
Squamous cell carcinoma of the head and neck
0.500 GeneticVariation BEFREE We previously identified a signature of 12 miRNAs whose aberrant expression associated with TP53 mutations and was prognostic for HNSCC. 30925916

2019

Entrez Id: 7157
Gene Symbol: TP53
TP53
Squamous cell carcinoma of the head and neck
0.500 GeneticVariation BEFREE We investigated the effects of the antiangiogenic hypoxic cytotoxins on hypoxia-induced gene expression and their hypoxia-selective cytotoxicity in human squamous cell carcinoma of the head and neck (SAS cells) and p53-deficient human non-small cell lung carcinoma H1299 cells transfected with either wild-type or mutant p53 gene. 14666730

2004

Entrez Id: 7157
Gene Symbol: TP53
TP53
Squamous cell carcinoma of the head and neck
0.500 GeneticVariation BEFREE The HPV typing and mutation analysis of all TP53 coding exons is a valuable diagnostic tool in patients with HNSCC and concurrent lung SCC, which can help to ensure that patients receive the most suitable treatment. 29522268

2018

Entrez Id: 7157
Gene Symbol: TP53
TP53
Squamous cell carcinoma of the head and neck
0.500 GeneticVariation BEFREE Our studies did not provide statistical evidence of an association between this rare TP53 variant and increased risk of melanoma, nor of lung cancer, but a possible protection against SCCHN. 23742673

2013

Entrez Id: 7157
Gene Symbol: TP53
TP53
Squamous cell carcinoma of the head and neck
0.500 GeneticVariation BEFREE Studies have shown recurring alterations at chromosome 9p21 (location of the CDKN2A) and TP53 mutations in the early stages of HNSCC. 22388100

2014

Entrez Id: 1956
Gene Symbol: EGFR
EGFR
Squamous cell carcinoma of the head and neck
0.500 GeneticVariation BEFREE In analyzing exons 18-21 of EGFR in 96 patients with SCCHN, only one SNP was found in the 78th site of exon 20 and it mostly existed in specimens coming from the hypopharynx. 19863329

2009

Entrez Id: 1956
Gene Symbol: EGFR
EGFR
Squamous cell carcinoma of the head and neck
0.500 GeneticVariation BEFREE This study evaluates the prognostic ability of four polymorphisms in EGFR gene for patients diagnosed with HNSCC and treated with chemoradiation. 17112774

2007