Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs10194776
rs10194776
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 GeneticVariation BEFREE Two polymorphisms in the HTR2B gene, rs10194776 and rs16827801, were associated with IQ (P=0.0004 and 0.003, respectively), ID (P=0.02 and 0.03) and LD (P=0.04 and 0.004). 24887447

2014

dbSNP: rs10410239
rs10410239
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 GeneticVariation BEFREE Linkage disequilibrium (LD) analysis revealed that the rs6511901 and rs10410239 polymorphisms of CC2D1A were in strong LD (D'=0.865), and haplotype analysis showed evidence for over-transmission from parents to MR offspring (p=0.0009). 22023432

2012

dbSNP: rs1047322213
rs1047322213
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 GeneticVariation BEFREE Whole exome sequencing identified a novel missense PQBP1 variant c.530G>A:p.R177H in the second family, in which the index patient presented with intellectual disability and dysmorphic facial features reminiscent of Kabuki-like syndrome and his brain magnetic resonance imaging revealed partial agenesis of corpus callosum, mild vermis, and brainstem hypoplasia. 30244542

2018

dbSNP: rs104886492
rs104886492
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 GeneticVariation BEFREE The c.194T>C mutation in HSD17B10 can be identified by the restriction fragment polymorphism analysis, thereby facilitating the screening of this novel mutation in individuals with intellectual disability of unknown etiology and their family members much easier. 22132097

2011

dbSNP: rs104894743
rs104894743
ARX
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 GeneticVariation BEFREE We generated three types of mice with knocked-in ARX mutations associated with X-linked lissencephaly (P353R) and mental retardation [P353L and 333ins(GCG)7]. 19605412

2009

dbSNP: rs1052108705
rs1052108705
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 GeneticVariation BEFREE We established an induced pluripotent stem cell (iPSC) line (SDQLCHi010-A) from peripheral blood mononuclear cells isolated from a 4-year-old boy with optic nerve malformation and intellectual disability carrying a heterozygous mutation (c.220A>G (p.S74G)) in PAX6 gene. 31707209

2019

dbSNP: rs1057516085
rs1057516085
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 GeneticVariation BEFREE The aim of the present work has been to investigate the molecular mechanisms of channel dysfunction caused by voltage-sensing domain mutations in Kv7.2 (R144Q, R201C, and R201H) or Kv7.3 (R230C) recently found in patients with epileptic encephalopathies and/or intellectual disability. 25740509

2015

dbSNP: rs1057519087
rs1057519087
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 GeneticVariation BEFREE Here we show that a homozygous mutation affecting a highly conserved MFSD2A residue (p.Ser339Leu) is associated with a progressive microcephaly syndrome characterized by intellectual disability, spasticity and absent speech. 26005865

2015

dbSNP: rs1131692042
rs1131692042
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 GeneticVariation BEFREE Using X-exome resequencing, we identified a novel missense mutation (c.191C>T; p.(A64V)) in the N-terminal domain of the protein, in a family with two affected cousins presenting with X-linked intellectual disability, cerebellar hypoplasia, and spondylo-epiphyseal dysplasia (SED). 26290468

2015

dbSNP: rs113994097
rs113994097
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 GeneticVariation BEFREE In another family the p.R722H mutation was found as compound heterozygosity with the common p.W748S mutation in two siblings with mental retardation, ptosis, epilepsy and psychiatric symptoms. 20438629

2010

dbSNP: rs115466046
rs115466046
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 GeneticVariation BEFREE We identified two heterozygous KCNJ10 mutations (p.R18Q and p.V84M) in three children (two unrelated families) with seizures, ASD, and intellectual disability. 21458570

2011

dbSNP: rs1162306056
rs1162306056
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 GeneticVariation BEFREE The aim of the present work has been to investigate the molecular mechanisms of channel dysfunction caused by voltage-sensing domain mutations in Kv7.2 (R144Q, R201C, and R201H) or Kv7.3 (R230C) recently found in patients with epileptic encephalopathies and/or intellectual disability. 25740509

2015

dbSNP: rs1171889657
rs1171889657
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 GeneticVariation BEFREE The c.194T>C mutation in HSD17B10 can be identified by the restriction fragment polymorphism analysis, thereby facilitating the screening of this novel mutation in individuals with intellectual disability of unknown etiology and their family members much easier. 22132097

2011

dbSNP: rs1177566365
rs1177566365
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 GeneticVariation BEFREE Targeted next-generation sequencing of a panel of intellectual disability related genes was performed on two unrelated male patients, and two missense variants in MECP2 were identified (p.Gly185Val and p.Arg167Trp). 26490184

2016

dbSNP: rs118203933
rs118203933
CA2
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 GeneticVariation BEFREE The presence of mental retardation and relative infrequency of skeletal fractures distinguish the clinical course of the patients with the Arabic mutation from those of the American and Belgian patients with the His 107-->Tyr mutation. 1301935

1992

dbSNP: rs121434612
rs121434612
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 GeneticVariation BEFREE Missense mutation in PAK3, R67C, causes X-linked nonspecific mental retardation. 10946356

2000

dbSNP: rs121434614
rs121434614
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 GeneticVariation BEFREE We report clinical, neuropsychological and molecular findings in affected males and carrier females in the fourth reported family with mental retardation caused by mutation in the PAK3 gene (Xq22.3-q23), W446S. 17853471

2007

dbSNP: rs1217691063
rs1217691063
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 GeneticVariation BEFREE Lack of association between MTHFR C677T and MTHFR A1298C genetic polymorphisms and mental retardation. 18782485

2008

dbSNP: rs121917899
rs121917899
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 GeneticVariation BEFREE The WW domain belonging to polyglutamine tract-binding protein 1 (PQBP1) is of particular interest due to its direct involvement in several X chromosome-linked intellectual disabilities, including Golabi-Ito-Hall (GIH) syndrome, where a single point mutation (Y65C) correlates with the development of the disease. 27456546

2016

dbSNP: rs121918364
rs121918364
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 GeneticVariation BEFREE A second mutation (Y72S) was identified within the first sushi domain of SRPX2 in a male with RSs and bilateral perisylvian polymicrogyria and his female relatives with mild MR or unaffected carrier status. 16497722

2006

dbSNP: rs121918523
rs121918523
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 GeneticVariation BEFREE Here, we report a novel nonsense mutation (p.K177X) in a male patient who has MR associated with CL/P. 17594395

2007

dbSNP: rs121918524
rs121918524
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 GeneticVariation BEFREE The PHF8 missense mutation c.836C>T is associated with mild MR, mild dysmorphic features, and either unilateral or bilateral cleft lip and cleft palate in two male siblings. 19843542

2010

dbSNP: rs121918822
rs121918822
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 GeneticVariation BEFREE We could identify eleven variations modifying the protein sequence of ASMT (ID only: N13H, N17K, V171M, E288D; controls only: E61Q, D210G, K219R, P243L, C273S, R291Q; ID and controls: L298F) and two deleterious splice site mutations (IVS5+2T>C and IVS7+1G>T) only observed in patients with ID. 21251267

2011

dbSNP: rs121965020
rs121965020
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 GeneticVariation BEFREE Q70X is one of the frequent diseases causing mutations of alpha-L-iduronidase (IDUA), leading to a severe phenotype with mental retardation and various somatic abnormalities, and making a request for PGD is understandable. 16478590

2006

dbSNP: rs122460151
rs122460151
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.010 GeneticVariation BEFREE This suggests that the R12S change is not the primary cause of short stature, microcephaly, and mental retardation in this family. 10607480

1999