Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7301
Gene Symbol: TYRO3
TYRO3
0.010 AlteredExpression disease BEFREE In THP-1 cells, co-stimulation with and flagellin for 24 h induced up-regulation of TYRO3 and GAS6, which could be prevented by neutralization of TLR5. 30852796 2019
Entrez Id: 3827
Gene Symbol: KNG1
KNG1
0.010 Biomarker disease BEFREE We hypothesized that bradykinin receptor inhibition alleviates the vascular dysfunction in a transgenic arcAβ mouse model of cerebral amyloidosis and that fMRI techniques can be used to monitor the treatment response. 30890928 2019
Entrez Id: 972
Gene Symbol: CD74
CD74
0.010 Biomarker disease BEFREE The impedimental effect of P33 on the production of beta amyloid () (soluble fraction and aggregated plaques) and on the typical features of the AD pathology (decreased dendritic spine density, synaptic markers, elevated inflammatory reactions) was also demonstrated. 31234498 2019
Entrez Id: 5816
Gene Symbol: PVALB
PVALB
0.010 Biomarker disease BEFREE Here, we show that amyloid-beta-induced hyperexcitability of hippocampal inhibitory parvalbumin (PV) interneurons importantly contributes to neuronal network dysfunction and memory impairment in APP/PS1 mice, a mouse model of increased amyloidosis. 31431685 2019
Entrez Id: 2100
Gene Symbol: ESR2
ESR2
0.010 Biomarker disease BEFREE This study aims to uncover whether ERβ participates in autophagy and promotes extracellular <sub>1-42</sub> degradation through the autophagy-lysosome system. 31332160 2019
Entrez Id: 406957
Gene Symbol: MIR181C
MIR181C
0.010 AlteredExpression disease BEFREE Lower serum expression of miR-181c-5p is associated with increased plasma levels of amyloid-beta 1-40 and cerebral vulnerability in normal aging. 31700619 2019
Entrez Id: 183
Gene Symbol: AGT
AGT
0.010 GeneticVariation disease BEFREE This approach is tested using large-scale experimental and structural perturbation analyses in over thirty mutations in three different proteins (cancer-associated NQO1, transthyretin related with amyloidosis and AGT linked to primary hyperoxaluria type I) and comprising five very common pathogenic mechanisms (loss-of-function and gain-of-toxic function aggregation, enzyme inactivation, protein mistargeting and accelerated degradation). 30215702 2019
Entrez Id: 79813
Gene Symbol: EHMT1
EHMT1
0.010 Biomarker disease BEFREE GLP-1RA ameliorated metabolic memory-induced amyloid-β and tau pathologies in vivo and in vitro. 30465895 2019
Entrez Id: 114131
Gene Symbol: UCN3
UCN3
0.010 Biomarker disease BEFREE Abbreviations β<sub>2</sub>m β<sub>2</sub>-microglobulin 3D three dimensional AD Alzheimer's disease ADT AutoDock Tools DRA Dialysis-related amyloidosis DSSP dictionary of secondary structure of proteins FEL free energy landscape GROMACS GROningen MAchine for Chemical Simulations LGA Lamarckian Genetic Algorithm LINCS LINear Constraint Solver MC main chain MD molecular dynamics MHC-I major histocompatibility complex class I MM-PBSA molecular mechanics Poisson-Boltzmann surface area PME nanometer (nm); particle mesh ewald PCA principal component analysis PDB protein data bank <i>R</i><sub>g</sub> radius-of-gyration RSV rifamycin SV RMSD root-mean-square deviation RMSF root-mean-square fluctuation SC side chain SPC simple point charge SASA Solvent accessible surface area VMD visual molecular dynamics Communicated by Ramaswamy H. Sarma. 31526272 2019
Entrez Id: 6853
Gene Symbol: SYN1
SYN1
0.010 Biomarker disease BEFREE Therefore, we conclude that Syn1 may promote production via the modulation of BACE1. 31830091 2019
Entrez Id: 55213
Gene Symbol: RCBTB1
RCBTB1
0.010 Biomarker disease BEFREE GLP-1RA ameliorated metabolic memory-induced amyloid-β and tau pathologies in vivo and in vitro. 30465895 2019
Entrez Id: 4240
Gene Symbol: MFGE8
MFGE8
0.010 Biomarker disease BEFREE Immunohistochemical and Congo red staining showed that lactadherin and apolipoprotein E were deposited, and that amyloidosis was enhanced in older-aged aortic media. 31436032 2019
Entrez Id: 6456
Gene Symbol: SH3GL2
SH3GL2
0.010 Biomarker disease BEFREE Endophilin 1 knockdown prevents synaptic dysfunction induced by oligomeric amyloid β. 31059028 2019
Entrez Id: 4299
Gene Symbol: AFF1
AFF1
0.010 GeneticVariation disease BEFREE Abbreviations β<sub>2</sub>m β<sub>2</sub>-microglobulin 3D three dimensional AD Alzheimer's disease ADT AutoDock Tools DRA Dialysis-related amyloidosis DSSP dictionary of secondary structure of proteins FEL free energy landscape GROMACS GROningen MAchine for Chemical Simulations LGA Lamarckian Genetic Algorithm LINCS LINear Constraint Solver MC main chain MD molecular dynamics MHC-I major histocompatibility complex class I MM-PBSA molecular mechanics Poisson-Boltzmann surface area PME nanometer (nm); particle mesh ewald PCA principal component analysis PDB protein data bank <i>R</i><sub>g</sub> radius-of-gyration RSV rifamycin SV RMSD root-mean-square deviation RMSF root-mean-square fluctuation SC side chain SPC simple point charge SASA Solvent accessible surface area VMD visual molecular dynamics Communicated by Ramaswamy H. Sarma. 31526272 2019
Entrez Id: 4050
Gene Symbol: LTB
LTB
0.010 Biomarker disease BEFREE The impedimental effect of P33 on the production of beta amyloid () (soluble fraction and aggregated plaques) and on the typical features of the AD pathology (decreased dendritic spine density, synaptic markers, elevated inflammatory reactions) was also demonstrated. 31234498 2019
Entrez Id: 814
Gene Symbol: CAMK4
CAMK4
0.010 GeneticVariation disease BEFREE Adeno-associated virus carrying the CaMK promoter driving the optogenetic channelrhodopsin-2 (CHR2) gene (or without the CHR2 gene, as control) was injected into the bilateral dentate gyri, followed by repeated intrahippocampal injections of soluble low-molecular-weight amyloid-β1-42 peptide (Aβ<sub>1-42</sub>). 31397354 2019
Entrez Id: 64581
Gene Symbol: CLEC7A
CLEC7A
0.010 GeneticVariation disease BEFREE Here, we show that absence of TYROBP/DAP12 in a mouse model of AD-type cerebral Aβ amyloidosis (APP<sup>KM670/671NL</sup>/PSEN1<sup>Δexon9</sup>) recapitulates the expected network characteristics by normalizing the transcriptome of APP/PSEN1 mice and repressing the induction of genes involved in the switch from homeostatic microglia to disease-associated microglia (DAM), including Trem2, complement (C1qa, C1qb, C1qc, and Itgax), Clec7a and Cst7. 30283032 2019
Entrez Id: 406949
Gene Symbol: MIR15B
MIR15B
0.010 AlteredExpression disease BEFREE The mRNA and protein levels of amyloid precursor protein, amyloid-β40 and amyloid-β42 were evaluated by quantitative real-time polymerase chain reaction, western blot assays and enzyme-linked immunosorbent assays. swAPP695-HEK293 cells were transfected with miR-15b-5p mimic, or treated with 1 μM curcumin 24 hours before miR-15b-5p inhibitor transfection. 31089060 2019
Entrez Id: 28982
Gene Symbol: FLVCR1
FLVCR1
0.010 Biomarker disease BEFREE Abbreviations β<sub>2</sub>m β<sub>2</sub>-microglobulin 3D three dimensional AD Alzheimer's disease ADT AutoDock Tools DRA Dialysis-related amyloidosis DSSP dictionary of secondary structure of proteins FEL free energy landscape GROMACS GROningen MAchine for Chemical Simulations LGA Lamarckian Genetic Algorithm LINCS LINear Constraint Solver MC main chain MD molecular dynamics MHC-I major histocompatibility complex class I MM-PBSA molecular mechanics Poisson-Boltzmann surface area PME nanometer (nm); particle mesh ewald PCA principal component analysis PDB protein data bank <i>R</i><sub>g</sub> radius-of-gyration RSV rifamycin SV RMSD root-mean-square deviation RMSF root-mean-square fluctuation SC side chain SPC simple point charge SASA Solvent accessible surface area VMD visual molecular dynamics Communicated by Ramaswamy H. Sarma. 31526272 2019
Entrez Id: 6319
Gene Symbol: SCD
SCD
0.010 Biomarker disease BEFREE APOE4 (OR = 3.07 [1.33-7.07], p<sub>unc</sub> < 0.01) was associated with CSF-amyloid in SCD, while it was only predictive for PET-amyloid in MCI (OR = 9.44 [2.93, 30.39], p<sub>FDR</sub> < 0.01). 31810489 2019
Entrez Id: 708
Gene Symbol: C1QBP
C1QBP
0.010 Biomarker disease BEFREE The impedimental effect of P33 on the production of beta amyloid () (soluble fraction and aggregated plaques) and on the typical features of the AD pathology (decreased dendritic spine density, synaptic markers, elevated inflammatory reactions) was also demonstrated. 31234498 2019
Entrez Id: 2006
Gene Symbol: ELN
ELN
0.010 Biomarker disease BEFREE The elastin of elastic fibres in AGel patients was strongly decreased compared to controls. 31814469 2019
Entrez Id: 2069
Gene Symbol: EREG
EREG
0.010 Biomarker disease BEFREE Here we show an approach to track the development of amyloid oligomers in situ by room temperature, continuous wave (cw) 9 and 95 GHz EPR. 31696167 2019
Entrez Id: 10533
Gene Symbol: ATG7
ATG7
0.010 AlteredExpression disease BEFREE Collectively, these data indicate that overexpression of ERβ exerts a neuroprotective effect through interacting with ATG7 protein and further enhances autophagy-lysosomal activity for <sub>1-42</sub> clearance at the cellular level. 31332160 2019
Entrez Id: 6531
Gene Symbol: SLC6A3
SLC6A3
0.010 Biomarker disease BEFREE Neuropathologic correlates of amyloid and dopamine transporter imaging in Lewy body disease. 31243072 2019