Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 5395
Gene Symbol: PMS2
PMS2
0.110 GeneticVariation phenotype CLINVAR
Entrez Id: 5728
Gene Symbol: PTEN
PTEN
0.100 CausalMutation phenotype CLINVAR
Entrez Id: 5792
Gene Symbol: PTPRF
PTPRF
0.010 Biomarker phenotype BEFREE RT-PCR was used to examine the expression of LAR (encoding the leukocyte-common antigen-related protein tyrosine phosphatase) in normal human colon mucosa, and colon polyps and tumors. 8917069 1996
Entrez Id: 324
Gene Symbol: APC
APC
0.050 Biomarker phenotype BEFREE In the case of colon cancer, we were fortunate in identifying an inherited tumor suppressor gene, the APC gene, that plays a major etiologic role in both the inherited disease, familial adenomatous polyposis (FAP), and in sporadic colon polyps. 9296069 1997
Entrez Id: 7956
Gene Symbol: NTT
NTT
0.010 AlteredExpression phenotype BEFREE There were no significant differences between the TT and NTT groups in gender; age at first admission, colectomy, and last follow-up visit; number of colonic polyps; or in presence of colorectal cancers, gastroduodenal adenomas, gastric fundic gland polyposis, retinal pigmented lesions, or extraintestinal tumors. 9085167 1997
Entrez Id: 324
Gene Symbol: APC
APC
0.050 GeneticVariation phenotype BEFREE We have previously suggested that the APC protein might modulate the frequency of mutations, such as loss of heterozygosity (LOH), necessary for colon polyp formation. 9843214 1998
Entrez Id: 133482
Gene Symbol: SLCO6A1
SLCO6A1
0.010 AlteredExpression phenotype BEFREE Clinical studies revealed that the GST activity of blood lymphocytes from individuals with either a personal or family history of colorectal cancer or a personal history of colon polyps was decreased significantly when compared to that of healthy controls. 9679568 1998
Entrez Id: 373156
Gene Symbol: GSTK1
GSTK1
0.010 AlteredExpression phenotype BEFREE Clinical studies revealed that the GST activity of blood lymphocytes from individuals with either a personal or family history of colorectal cancer or a personal history of colon polyps was decreased significantly when compared to that of healthy controls. 9679568 1998
Entrez Id: 2944
Gene Symbol: GSTM1
GSTM1
0.010 GeneticVariation phenotype BEFREE Polymorphism of GSTM1 gene in patients with colorectal cancer and colonic polyps. 10445390 1999
Entrez Id: 2981
Gene Symbol: GUCA2B
GUCA2B
0.010 Biomarker phenotype BEFREE Our experiments demonstrate that mRNA transcripts for guanylin and uroguanylin are markedly reduced in colon polyps and adenocarcinomas. 11016642 2000
Entrez Id: 2980
Gene Symbol: GUCA2A
GUCA2A
0.010 Biomarker phenotype BEFREE Our experiments demonstrate that mRNA transcripts for guanylin and uroguanylin are markedly reduced in colon polyps and adenocarcinomas. 11016642 2000
Entrez Id: 3611
Gene Symbol: ILK
ILK
0.300 Biomarker phenotype CTD_human Dysregulation of integrin-linked kinase (ILK) signaling in colonic polyposis. 11593435 2001
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.030 GeneticVariation phenotype BEFREE We conclude that it is important to analyze p53 mutations in colonic polyps, especially when the cut end of the polyp is difficult to evaluate histologically, in order to predict recurrence. 11480796 2001
Entrez Id: 4953
Gene Symbol: ODC1
ODC1
0.010 AlteredExpression phenotype BEFREE It was shown that the 3-month supplementation of patients having colon polyps with folic acid (5 mg/day) led to a 35% decrease in abnormally high ornithine decarboxylase activity in polyps that was accompanied by a 43% increase of S-adenosylmethionine content in polyps. 11795438 2001
Entrez Id: 5468
Gene Symbol: PPARG
PPARG
0.050 AlteredExpression phenotype BEFREE In conclusion, patients with active Acro have a reduced expression of PPARgamma in the colonic mucosa, which appears be related to the increased serum IGF-I levels and might lead to an increased prevalence of colonic polyps. 11994396 2002
Entrez Id: 1045
Gene Symbol: CDX2
CDX2
0.050 GeneticVariation phenotype BEFREE Inactivation of one Cdx2 allele predisposes mice to develop colon polyps, and loss of CDX2 expression is a feature of some poorly differentiated colon carcinomas in humans. 12404231 2002
Entrez Id: 3479
Gene Symbol: IGF1
IGF1
0.030 AlteredExpression phenotype BEFREE In conclusion, patients with active Acro have a reduced expression of PPARgamma in the colonic mucosa, which appears be related to the increased serum IGF-I levels and might lead to an increased prevalence of colonic polyps. 11994396 2002
Entrez Id: 780897
Gene Symbol: HPP1
HPP1
0.010 PosttranslationalModification phenotype BEFREE The HPP1 gene was initially discovered because of its frequent hypermethylation in hyperplastic colon polyps, but it is also hypermethylated in colorectal adenomas and carcinomas. 12384516 2002
Entrez Id: 1045
Gene Symbol: CDX2
CDX2
0.050 Biomarker phenotype BEFREE Here we show that the colonic polyp number is about six times higher in Apc+/Delta716 Cdx2+/- compound mutant mice. 14625550 2003
Entrez Id: 5468
Gene Symbol: PPARG
PPARG
0.050 AlteredExpression phenotype BEFREE In this study we evaluated the expression of PPARgamma in the biopsy samples of the polyps and outside polyps colonic mucosa from seven patients with active, untreated acromegaly, 11 with cured disease, and 15 controls. 12915690 2003
Entrez Id: 5468
Gene Symbol: PPARG
PPARG
0.050 GeneticVariation phenotype BEFREE In this study the expression and mutations of the PPARgamma gene in the colonic polyps and mucosa outside polyps were investigated in 10 acromegalic and 17 non-acromegalic patients. 15008240 2003
Entrez Id: 4292
Gene Symbol: MLH1
MLH1
0.030 Biomarker phenotype BEFREE The proband's metastatic duodenal cancer and his sister's malignant colon polyps had high-frequency microsatellite instability but had detectable MLH1, MSH2, and MSH6 proteins by immunohistochemistry. 14762794 2004
Entrez Id: 1045
Gene Symbol: CDX2
CDX2
0.050 AlteredExpression phenotype BEFREE Mice heterozygous for Cdx2 inactivation develop colonic polyps with epithelial cells showing gastric or squamous differentiation. 15825077 2005
Entrez Id: 324
Gene Symbol: APC
APC
0.050 GeneticVariation phenotype BEFREE From this descriptive study, it seems that the short-term risk for colonic polyps in I1307K APC mutation is low, primarily affecting patients with previously diagnosed colon tumors. 15733272 2005
Entrez Id: 4292
Gene Symbol: MLH1
MLH1
0.030 Biomarker phenotype BEFREE Aberrantly methylated CDKN2A, MGMT, and MLH1 in colon polyps and in fecal DNA from patients with colorectal polyps. 15709190 2005