Source: ALL
Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 5311
Gene Symbol: PKD2
PKD2
0.100 GeneticVariation disease BEFREE The spectrum of germ-line mutations in both genes and the somatic mutations identified from individual PKD1 or PKD2 cysts indicate that loss of function of either PKD1 or PKD2 is the mechanism of cystogenesis in autosomal-dominant polycystic kidney disease. 11195048 2001
Entrez Id: 5311
Gene Symbol: PKD2
PKD2
0.100 GeneticVariation disease BEFREE Autosomal dominant polycystic kidney disease (ADPKD) is a very common inherited disease caused by mutations in PKD1 or PKD2 genes characterized by progressive enlargement of fluid-filled cysts and loss of renal function [1]. 12411744 2003
Entrez Id: 5311
Gene Symbol: PKD2
PKD2
0.100 GeneticVariation disease BEFREE Previously described nonsense mutation in PKD2 seems to be associated with cysts in liver and milder clinical course. 16430766 2006
Entrez Id: 5311
Gene Symbol: PKD2
PKD2
0.100 Biomarker disease BEFREE We found frequent LOH in PRKCSH (22/29) and PKD1/PKD2 (2/3) cysts of patients with known heterozygous germline variants in the respective genes. 27552964 2016
Entrez Id: 5311
Gene Symbol: PKD2
PKD2
0.100 GeneticVariation disease BEFREE Here we find somatic mutations of PKD2 in 71% of ADPKD2 cysts analysed. 10835625 2000
Entrez Id: 5311
Gene Symbol: PKD2
PKD2
0.100 AlteredExpression disease BEFREE Work in transgenic mice showed that somatic loss of Pkd2 expression is necessary for renal cyst formation, and recently we showed that somatic mutations inactivating the inherited healthy allele were present in 9 of 23 cysts from a human ADPKD2 kidney, supporting a two-hit loss-of-function model for ADPKD2 cystogenesis. 10655555 2000
Entrez Id: 5311
Gene Symbol: PKD2
PKD2
0.100 GeneticVariation disease BEFREE Autosomal dominant polycystic kidney disease (ADPKD) is an inherited monogenic renal disease characterised by the accumulation of clusters of fluid-filled cysts in the kidneys and is caused by mutations in PKD1 or PKD2 genes. 30858458 2019
Entrez Id: 5311
Gene Symbol: PKD2
PKD2
0.100 Biomarker disease BEFREE Autosomal dominant polycystic kidney disease (ADPKD) is primarily caused by mutations in polycystin 1, transient receptor potential channel interacting (PKD1) and PKD2, and characterized by numerous cysts in various organs, primarily the kidneys and liver. 30651829 2019
Entrez Id: 5587
Gene Symbol: PRKD1
PRKD1
0.050 GeneticVariation disease BEFREE Studies in MDCK cells stably expressing wild-type and mutant forms of PKD found that cell lines expressing the Y528C variant formed cysts in culture and displayed increased rates of growth and apoptosis. 22031115 2012
Entrez Id: 5587
Gene Symbol: PRKD1
PRKD1
0.050 GeneticVariation disease BEFREE The fact that most mutations from ADPKD patients result in truncated polycystins as well as evidence of a loss of heterozygosity mechanism in individual PKD cysts indicate that the loss of the function of either PKD1 or PKD2 is the most likely pathogenic mechanism for ADPKD. 10655152 2000
Entrez Id: 5587
Gene Symbol: PRKD1
PRKD1
0.050 Biomarker disease BEFREE This report proposes that calcium response to fluid-flow shear stress can be used as a readout of polycystin function and that loss of mechanosensation in the renal tubular epithelia is a feature of PKD cysts. 16565258 2006
Entrez Id: 5587
Gene Symbol: PRKD1
PRKD1
0.050 AlteredExpression disease BEFREE We also found that PKD family kinases were increased and activated in alveolar macrophages, bronchiolar epithelium, and honeycomb cysts in IPF lungs. 25000413 2014
Entrez Id: 5587
Gene Symbol: PRKD1
PRKD1
0.050 AlteredExpression disease BEFREE Taken together, our results suggest that Cux1 expression in PKD is not directly involved in cystogenesis but promotes cell proliferation required for expansion of existing cysts, primarily by repression of p27. 28701314 2017
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.040 Biomarker disease BEFREE Substantially higher VPF protein concentrations were detected in cyst fluids of the two malignant (60, 440 pM) and two borderline tumors (210, 590 pM) than in the seven benign serous cysts (mean, 10 +/- 3 pM). 8667614 1996
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.040 Biomarker disease LHGDN The aim of the research was to reveal vascular endothelial growth factor (VEGF) immunolocalization in endometrioma cysts and endometrial tissues. 18556049 2009
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.040 AlteredExpression disease BEFREE We then evaluated VEGF protein expression in human head and neck specimens containing normal epithelium (n = 10), dysplasia or carcinoma in situ (CIS; n = 15), early invasive SCCs (n = 9), advanced primary SCCs (n = 10), lymph node metastases (n = 3), and s.c. tumors or cysts (n = 7) formed in severe combined immunodeficient mice. 10213212 1999
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.040 Biomarker disease BEFREE The VEGF/ VPF concentration in the cyst fluid obtained from patients who required repeated aspiration or underwent surgical resection because of recurrent accumulation (84.8 +/- 58.3 ng/mL, mean +/- SD, n = 18) was significantly higher than that in the cysts that regressed or disappeared after a single aspiration (4.3 +/- 4.4 ng/mL, n = 12, P < 0.001). 9177415 1997
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.040 Biomarker disease BEFREE Ten were recurrences and five were associated with the basal-cell naevus syndrome (Gorlin-Goltz syndrome). p53 protein was found in 50% (15/30) of the odontogenic keratocysts, in 53.3% (8/15) of non-recurrent cysts, in 40% (4/10) of recurrent cysts and in 60% (3/5) of those associated with the basal-cell naevus syndrome. 8850645 1995
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.040 GeneticVariation disease BEFREE Longitudinal microcomputed tomography (μCT) imaging and histopathological analyses revealed an increased rate of cyst formation, increased proportion of cysts with proliferating cells, higher frequency of atypical cysts as well as the development of neoplasms in Vhl/Kif3a/Trp53 mutant kidneys compared to Kif3a/Trp53 or Vhl/Kif3a mutant kidneys. 27126173 2016
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.040 AlteredExpression disease BEFREE The expression of p53 protein was studied in odontogenic keratocysts (OKC, 11 solitary, 5 recurrent and 6 NBCCS cysts), radicular (RC, n = 5) and dentigerous (DC, n = 5) cysts, using a panel of antibodies to p53 (clone BP53-12, clone 1801 and polyclonal CM1) and a sensitive biotin-streptavidin method on paraffin embedded sections. 8835823 1996
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.040 GeneticVariation disease BEFREE This study immunohistochemically evaluated (by Ki-67 and p53 staining) the presence of p53 signature, TILT lesions, and STIC in 14 consecutive cases of prophylactic salpingo-oophorectomy in women with BRCA-1/2 mutation (bilateral salpingo-oophorectomy), 11 cases of macroscopically inconspicuous adnexae of patients with primary contralateral tubal cancer (TC), 9 cases of primary peritoneal cancer (PPC), and 10 cases of serous ovarian borderline tumors, evaluating the fallopian tubes (using the Sectioning and Extensively Examining the FIMbria protocol), ovarian surface epithelium, and ovarian cortical inclusion cysts. 21804388 2011
Entrez Id: 727897
Gene Symbol: MUC5B
MUC5B
0.030 GeneticVariation disease BEFREE We have previously found that 1) a common gain-of-function promoter variant in MUC5B rs35705950 is the strongest risk factor (genetic and otherwise), accounting for 30-35% of the risk of developing IPF, a disease that was previously considered idiopathic; 2) the MUC5B promoter variant can potentially be used to identify individuals with preclinical pulmonary fibrosis and is predictive of radiologic progression of preclinical pulmonary fibrosis; and 3) MUC5B may be involved in the pathogenesis of pulmonary fibrosis with MUC5B message and protein expressed in bronchiolo-alveolar epithelia of IPF and the characteristic IPF honeycomb cysts. 27630174 2016
Entrez Id: 5589
Gene Symbol: PRKCSH
PRKCSH
0.030 GeneticVariation disease BEFREE We previously found that, in patients with a PRKCSH mutation, over 76% of the cysts acquired a somatic 'second-hit' mutation in the wild type PRKCSH allele. 23209713 2012
Entrez Id: 1048
Gene Symbol: CEACAM5
CEACAM5
0.030 Biomarker disease BEFREE When using prespecified criteria, there was poor agreement between CEA and molecular analysis for the classification of mucinous cysts (kappa = 0.2). 19249035 2009
Entrez Id: 727897
Gene Symbol: MUC5B
MUC5B
0.030 AlteredExpression disease BEFREE Here we show in humans that MUC5B, a mucin thought to be restricted to conducting airways, is co-expressed with surfactant protein C (SFTPC) in type 2 alveolar epithelia and in epithelial cells lining honeycomb cysts, indicating that cell types involved in lung fibrosis in distal airspace express MUC5B. 30560893 2018