Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.090 Biomarker disease BEFREE The increase in antral IL-1beta and IL-8 production and inflammation in DU is related to increased numbers of bacteria and not to an increase in cytokine production per cagA+ isolate. 10562576 1999
Entrez Id: 3576
Gene Symbol: CXCL8
CXCL8
0.080 AlteredExpression disease BEFREE IL-1beta and IL-8 levels in the antrum were greater in DU than in gastritis; in the corpus the cytokine level/H pylori differed irrespective of similar H pylori densities. 10562576 1999
Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
0.020 Biomarker disease BEFREE Compared with the healthy controls, a positive association with DPA1*0201 (P= 0.032) and DPB1*0901 (P=0.005) in gastric ulcers, a positive association with DRB1*0405 (P=0.022) and DQB1*0401 (P=0.044) in duodenal ulcers, and a positive association with DPB1*0901 (P=0.016) in gastritis were observed. 10514120 1999
Entrez Id: 129831
Gene Symbol: RBM45
RBM45
0.020 Biomarker disease BEFREE Compared with the healthy controls, a positive association with DPA1*0201 (P= 0.032) and DPB1*0901 (P=0.005) in gastric ulcers, a positive association with DRB1*0405 (P=0.022) and DQB1*0401 (P=0.044) in duodenal ulcers, and a positive association with DPB1*0901 (P=0.016) in gastritis were observed. 10514120 1999
Entrez Id: 3113
Gene Symbol: HLA-DPA1
HLA-DPA1
0.010 Biomarker disease BEFREE Compared with the healthy controls, a positive association with DPA1*0201 (P= 0.032) and DPB1*0901 (P=0.005) in gastric ulcers, a positive association with DRB1*0405 (P=0.022) and DQB1*0401 (P=0.044) in duodenal ulcers, and a positive association with DPB1*0901 (P=0.016) in gastritis were observed. 10514120 1999
Entrez Id: 3115
Gene Symbol: HLA-DPB1
HLA-DPB1
0.010 Biomarker disease BEFREE Compared with the healthy controls, a positive association with DPA1*0201 (P= 0.032) and DPB1*0901 (P=0.005) in gastric ulcers, a positive association with DRB1*0405 (P=0.022) and DQB1*0401 (P=0.044) in duodenal ulcers, and a positive association with DPB1*0901 (P=0.016) in gastritis were observed. 10514120 1999
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.010 AlteredExpression disease BEFREE The present study was performed to determine the apoptosis rate and mRNA and protein expression for Bax and Bcl-2 in the gastric mucosa of duodenal ulcer (DU) patients with H. pylori infection before and after H. pylori eradication. 10365897 1999
Entrez Id: 3576
Gene Symbol: CXCL8
CXCL8
0.080 Biomarker disease BEFREE A total of 153 H. pylori isolates from patients with chronic gastritis (n = 74) or gastro-duodenal ulcers (n = 79) was examined for vacA genotypes and cagA status by polymerase chain reaction (PCR) and dot blot, and for their ability to induce IL-8 secretion by HEp-2 cells. 10865946 2000
Entrez Id: 168400
Gene Symbol: DDX53
DDX53
0.030 GeneticVariation disease BEFREE This study was undertaken to determine whether infection with Helicobacter pylori strains that contain the cagE gene was associated with duodenal ulceration in children. 10762568 2000
Entrez Id: 2691
Gene Symbol: GHRH
GHRH
0.010 Biomarker disease BEFREE A 53-year old female patient with duodenal ulcer and Helicobacter pylori infection was treated three times with a proton pump inhibitor-based triple therapy, such as lansoprazole-clarithromycin-amoxicillin (INN, amoxicilline) and lansoprazole-minocycline-cefaclor. 10872651 2000
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.100 GeneticVariation disease BEFREE Logistic regression identified H. pylori infection and NSAIDs use as independent risk factors for peptic ulcer diseases whereas the simultaneous carriage of IL-1B(+3954) allele 2 and IL-1RN allele 2 was associated with reduced risk for duodenal ulcer disease (OR: 0.37, 95% CI = 0.14-0.9). 11531943 2001
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 GeneticVariation disease BEFREE However, in 8 (18%) of the cases, more than one subtype was present, and an association between patients with multiple subtypes and disease outcome was observed when compared to patients with isolated subtypes (P = 0.048). cagA was a marker of H. pylori strains for duodenal ulcer disease in our population, and in spite of the differences in the 3' region of the cagA gene, the Japanese methodology was able to detect the cagA status in most cases. 11158115 2001
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.090 GeneticVariation disease BEFREE These results suggest that TNF and LTA gene polymorphisms are related to the development of gastric and duodenal ulcer and may determine disease outcome in H. pylori infection. 11781708 2001
Entrez Id: 3576
Gene Symbol: CXCL8
CXCL8
0.080 AlteredExpression disease BEFREE The present study demonstrates that in Helicobacter pylori-infected human gastric mucosa, cag+ infection is associated with enhanced Interleukin-8 expression, higher levels of active gastritis and bacterial density, and presence of duodenal ulcer. 11057919 2001
Entrez Id: 4049
Gene Symbol: LTA
LTA
0.040 GeneticVariation disease BEFREE These results suggest that TNF and LTA gene polymorphisms are related to the development of gastric and duodenal ulcer and may determine disease outcome in H. pylori infection. 11781708 2001
Entrez Id: 5743
Gene Symbol: PTGS2
PTGS2
0.300 Biomarker disease CTD_human Healing of duodenal ulcers is not impaired by indomethacin or rofecoxib, the selective COX-2 inhibitor, in rats. 12481160 2002
Entrez Id: 4843
Gene Symbol: NOS2
NOS2
0.300 Biomarker disease CTD_human We investigated the effects of COX and NOS inhibitors on the healing of duodenal ulcers, in comparison with gastric ulcers, in rats. 12481160 2002
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.100 GeneticVariation disease BEFREE Carriage of IL-1RN allele 2 significantly protected against DU disease while the IL-1B-511 T/T genotype significantly protected against DU recurrence in patients older than 60 years. 12105837 2002
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.090 GeneticVariation disease BEFREE Interleukin 1beta polymorphisms increase risk of hypochlorhydria and atrophic gastritis and reduce risk of duodenal ulcer recurrence in Japan. 12105837 2002
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.090 GeneticVariation disease LHGDN Interleukin 1beta polymorphisms increase risk of hypochlorhydria and atrophic gastritis and reduce risk of duodenal ulcer recurrence in Japan. 12105837 2002
Entrez Id: 3117
Gene Symbol: HLA-DQA1
HLA-DQA1
0.030 GeneticVariation disease BEFREE Certain HLA-DQA1 alleles have been reported to be associated with gastric and duodenal ulcer disease in infected patients in the Japanese population. 11782575 2002
Entrez Id: 168400
Gene Symbol: DDX53
DDX53
0.030 Biomarker disease BEFREE The aims of the present study were to clarify the association between the cagE gene and clinical outcome and to analyze the relationship between the cagE gene and two other virulence factors--cagA and vacA--in two areas in Japan (Fukui and Okinawa) where the prevalence of duodenal ulcer and gastric cancer risk are quite different. 11911357 2002
Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
0.020 Biomarker disease BEFREE In the German population, the carrier frequency of DRB1*15 was higher in H. pylori-positive individuals with gastric or duodenal ulcer but without statistical significance (gastric ulcer: odds ratio, 2.13; chi2 = 3.77; P = 0.05; Bonferroni correction, Pc = not significant; and duodenal ulcer: odds ratio, 2.15; chi2 = 3.4; P = 0.06; Pc = not significant). 11782575 2002
Entrez Id: 129831
Gene Symbol: RBM45
RBM45
0.020 Biomarker disease BEFREE In the German population, the carrier frequency of DRB1*15 was higher in H. pylori-positive individuals with gastric or duodenal ulcer but without statistical significance (gastric ulcer: odds ratio, 2.13; chi2 = 3.77; P = 0.05; Bonferroni correction, Pc = not significant; and duodenal ulcer: odds ratio, 2.15; chi2 = 3.4; P = 0.06; Pc = not significant). 11782575 2002
Entrez Id: 7040
Gene Symbol: TGFB1
TGFB1
0.320 Therapeutic disease CTD_human Effect of exogenous administration of transforming growth factor-beta and famotidine on the healing of duodenal ulcer under the impact of indomethacin. 12868675 2003