Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.500 GeneticVariation group BEFREE We analyzed the effect of anti-EGFR monoclonal antibodies (mAbs; cetuximab and panitumumab) in combination with chemotherapeutic agents (docetaxel, cisplatin, and epirubicin) on EGFR-expressing TNBC cell lines that have different mutation statuses for one oncogene (KRAS) and two tumor suppressor genes (PTEN and BRCA1). 27864890 2017
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.500 GeneticVariation group BEFREE 'BRCAness' is a term used to describe cancer cells that behave similarly to tumors with BRCA1 or BRCA2 mutations. 29620483 2018
Entrez Id: 472
Gene Symbol: ATM
ATM
0.500 GeneticVariation group BEFREE Instead, the mutation patterns of the tumour suppressor TP53 (which encodes p53), ataxia telangiectasia mutated (ATM) and cyclin-dependent kinase inhibitor 2A (CDKN2A; which encodes p16INK4A and p14ARF) support the oncogene-induced DNA replication stress model, which attributes genomic instability and TP53 and ATM mutations to oncogene-induced DNA damage. 20177397 2010
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.500 GeneticVariation group BEFREE Sequencing of BRCA1 amplified from genomic DNA of lymphocytes and microdissected ovarian tumor cells of a familial ovarian cancer patient revealed three, rare heterozygous DNA variations (2418delA, 233G-->A, and IVS1-10T-->C) in both tumor and constitutional (lymphocyte) DNA. 10459348 1999
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.500 GeneticVariation group BEFREE We also discuss the impact of BRCA1 hypermethylation, as a form of epigenetic change, versus BRCA1 genetic mutations in tumour development. 12191635 2002
Entrez Id: 7015
Gene Symbol: TERT
TERT
0.500 GeneticVariation group BEFREE The prognostic impact of TERT mutations has been controversial in IDH-wild tumors, particularly in glioblastomas (GBM). 27503138 2016
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.500 GeneticVariation group BEFREE Intensive surveillance may not detect breast carcinoma at an early, curable stage in young women with BRCA1 or BRCA2 gene mutations because the growth rate of the tumors in these women most likely will be rapid and the density of the breast tissue may compromise detection. 10630176 1999
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.500 GeneticVariation group BEFREE The INK4a-ARF locus encodes two tumor suppressor proteins involved in cell-cycle regulation, p16INK4a and p14ARF, whose functions are inactivated in many human cancers. 11232644 2001
Entrez Id: 472
Gene Symbol: ATM
ATM
0.500 GeneticVariation group BEFREE <i>Atm</i>-mutant rats (<i>Atm<sup>L2262P/L2262P</sup></i> ) expressed low levels of ATM protein, suggesting a destabilizing effect of the mutation, and had a significantly reduced lifespan compared with <i>Atm<sup>+/+</sup></i> Whereas these rats did not show cerebellar atrophy, they succumbed to hind-limb paralysis (45%), and the remainder developed tumors. 27895165 2017
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.500 GeneticVariation group BEFREE This locus has been associated with frequent loss of heterozygosity (LOH) and allelic imbalance in breast cancers; however, BRCA1 mutations are rare events in sporadic breast cancer with LOH in the region, suggesting that another tumor suppressor gene resides in this area. 16538531 2006
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.500 GeneticVariation group BEFREE In malignant glioma specimens, homozygous p16 gene deletions were significantly more common in high-grade tumors than in low-grade gliomas. 9049826 1997
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.500 GeneticVariation group BEFREE Consistent with earlier studies, TP53 mutations were present in the majority (96.6%) of the tumors studied, and mutations in BRCA1/2 that affect DNA repair were also detected frequently in 20.5% of the tumors. 31124283 2019
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.500 GeneticVariation group BEFREE Patients and Methods Plasma and tumor samples were obtained from 30 patients with HGSC with either BRCA1 or BRCA2 germline mutation. 28414925 2017
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.500 GeneticVariation group BEFREE In this review, we discuss how the discovery of BRCA1 and BRCA2 has not only provided an understanding of the molecular processes that drive tumourigenesis but also reignited an interest in therapeutically exploiting loss-of-function alterations in tumour suppressor genes. 27528623 2016
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.500 GeneticVariation group BEFREE Three of 32 tumors (9%) had pathogenic (ARUP class-5) BRCA1 gene alterations. 29453630 2018
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.500 GeneticVariation group BEFREE Germ-line mutations in the tumour suppressor proteins BRCA1 and BRCA2 predispose to breast and ovarian cancer. 20437199 2010
Entrez Id: 4609
Gene Symbol: MYC
MYC
0.500 GeneticVariation group BEFREE Overexpression of epidermal growth factor receptor (EGF-R), K-ras gene mutations and c-myc gene amplification were studied in tumor and normal lung tissues from 100 patients with non-small cell lung cancer. 9468555 1998
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.500 GeneticVariation group BEFREE Loss of heterozygosity on Xp was twice as common in tumor DNA from germline BRCA1 mutation carriers (9/14 vs 19/67, P = 0.02). 10684722 2000
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.500 GeneticVariation group BEFREE The Ink4a/Arf (CDKN2a) locus encodes two proteins that regulate two of the most important tumor suppressor pathways represented by p53 and Rb. 15846097 2005
Entrez Id: 472
Gene Symbol: ATM
ATM
0.500 GeneticVariation group BEFREE Tumors with ATM mutations only partially correlated with tumors with loss of an ATM allele through an 11q deletion and, interestingly, those 11q-deleted tumors with a second wild-type ATM allele had a preserved DNA damage response. 16014569 2005
Entrez Id: 472
Gene Symbol: ATM
ATM
0.500 GeneticVariation group BEFREE SETD2-mutated LUADs exhibited relatively poor recurrence- free survival (RFS) and mutations in STK11 and ATM were associated with poor RFS among KRAS-mutant tumors. 27687306 2017
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.500 GeneticVariation group BEFREE Allelic deletions within this chromosomal region most often include the tumour suppressor gene p16. 12690309 2003
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.500 GeneticVariation group BEFREE The recent approval of olaparib (Lynparza), the poly (ADP-ribose) polymerase (PARP) inhibitor for treating tumors harboring BRCA1 or BRCA2 mutations, represents the first medicine based on this principle, exploiting an underlying cause of tumor formation that also represents an Achilles' heel. 26590714 2015
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.500 GeneticVariation group BEFREE Furthermore, p53 mutation and EGFR overexpression occur similarly in BRCA1-mutated and basal-like cancers; these shared alterations provide very important information for understanding not only the genetic and epigenetic carcinogenic pathways in these tumors but also therapeutic strategies. 18946749 2008
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.500 GeneticVariation group BEFREE HDs were also noted for known tumor suppressor genes (TSG), including CDKN2A, CDKN2B, SMAD4, and GALR1, and identified PDE4D and MGC48628 as potentially novel TSGs. 18519675 2008