Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 6925
Gene Symbol: TCF4
TCF4
0.180 Biomarker disease BEFREE Haploinsufficiency of the TCF4 (formatting follows IUPAC nomenclature: TCF4 protein/protein function, Tcf4 rodent gene cDNA mRNA, TCF4 human gene cDNA mRNA) gene causes the Pitt-Hopkins syndrome-a neurodevelopmental disease characterized by severe mental retardation. 24413739 2014
Entrez Id: 6925
Gene Symbol: TCF4
TCF4
0.180 AlteredExpression disease BEFREE Severe mental retardation with breathing abnormalities (Pitt-Hopkins syndrome) is caused by haploinsufficiency of the neuronal bHLH transcription factor TCF4. 17478476 2007
Entrez Id: 6925
Gene Symbol: TCF4
TCF4
0.180 GeneticVariation disease BEFREE Haploinsufficiency of the gene encoding for transcription factor 4 (TCF4) was recently identified as the underlying cause of Pitt-Hopkins syndrome (PTHS), an underdiagnosed mental-retardation syndrome characterised by a distinct facial gestalt, breathing anomalies and severe mental retardation. 18728071 2008
Entrez Id: 4208
Gene Symbol: MEF2C
MEF2C
0.180 Biomarker disease BEFREE Taken together, these results strongly suggest that haploinsufficiency of MEF2C is responsible for severe mental retardation with stereotypic movements, seizures and/or cerebral malformations. 19592390 2010
Entrez Id: 6925
Gene Symbol: TCF4
TCF4
0.180 Biomarker disease BEFREE Tcf4 null mutant mice die perinatally, and haploinsufficiency of TCF4 in humans causes severe mental retardation. 20434134 2010
Entrez Id: 6925
Gene Symbol: TCF4
TCF4
0.180 GeneticVariation disease BEFREE TCF4 mutations also cause Pitt-Hopkins Syndrome, an autosomal-dominant neurodevelopmental disorder associated with severe mental retardation. 20421335 2010
Entrez Id: 6567
Gene Symbol: SLC16A2
SLC16A2
0.150 Biomarker disease BEFREE Mutations in the thyroid hormone transporter monocarboxylate transporter 8 (MCT8) prevent appropriate entry of thyroid hormones into brain cells during development and cause severe mental retardation in affected patients. 27977298 2017
Entrez Id: 6567
Gene Symbol: SLC16A2
SLC16A2
0.150 GeneticVariation disease BEFREE Recently, the monocarboxylate transporter 8 (MCT8) was identified as a thyroid hormone transporter, and MCT8 mutations have been associated with Allan-Herndon-Dudley syndrome, an X linked condition characterized by severe mental retardation, dysarthria, athetoid movements, muscle hypoplasia, and spastic paraplegia. 17899191 2008
Entrez Id: 6567
Gene Symbol: SLC16A2
SLC16A2
0.150 GeneticVariation disease BEFREE Our results show the difficulty of distinguishing AHDS from patients with X-linked intellectual disability solely on the basis of clinical features and biochemical tests, and we advise screening for MCT8 mutations in either young or older patients with severe intellectual disability, axial hypotonia/dystonia, poor head control, spastic paraplegia, and athetoid movements even when they have normal thyroid hormone profiles. 23419639 2013
Entrez Id: 6567
Gene Symbol: SLC16A2
SLC16A2
0.150 Biomarker disease BEFREE Recently mutations in the SLC16A2 gene coding for the monocarboxylate thyroid hormone transporter 8, MCT8, have been associated with Allan-Herndon-Dudley syndrome (AHDS), an X-linked condition characterized by severe mental retardation, dysarthria, athetoid movements, muscle hypoplasia and spastic paraplegia. 20713192 2011
Entrez Id: 6567
Gene Symbol: SLC16A2
SLC16A2
0.150 GeneticVariation disease BEFREE We report a novel 1 bp deletion (c.1834delC) in the MCT8 gene in a large Brazilian family with Allan-Herndon-Dudley syndrome (AHDS), an X linked condition characterised by severe mental retardation and neurological dysfunction. 15980113 2006
Entrez Id: 2290
Gene Symbol: FOXG1
FOXG1
0.140 GeneticVariation disease BEFREE Haploinsufficiency of novel FOXG1B variants in a patient with severe mental retardation, brain malformations and microcephaly. 16133170 2005
Entrez Id: 2290
Gene Symbol: FOXG1
FOXG1
0.140 GeneticVariation disease BEFREE FOXG1-related disorders, caused by deletions, intragenic mutations or duplications, are usually associated with severe intellectual disability, autistic features, and, in 87% of subjects, epileptiform manifestations. 30639390 2019
Entrez Id: 2290
Gene Symbol: FOXG1
FOXG1
0.140 Biomarker disease BEFREE FOXG1-related disorders are associated with severe intellectual disability, absent speech with autistic features, and epilepsy. 24836831 2014
Entrez Id: 2290
Gene Symbol: FOXG1
FOXG1
0.140 Biomarker disease BEFREE FOXG1B (forkhead box G1B) is a very intriguing candidate gene since it is known to promote neuronal progenitor proliferation and to suppress premature neurogenesis and its disruption is reported in a patient with postnatal microcephaly, corpus callosum agenesis, seizures, and severe mental retardation. 18627055 2008
Entrez Id: 9378
Gene Symbol: NRXN1
NRXN1
0.130 GeneticVariation disease BEFREE Assessment of the clinical details in 25 previously undescribed individuals with NRXN1 exonic deletions demonstrated recurrent phenotypic features consisting of moderate to severe intellectual disability (91%), severe language delay (81%), autism spectrum disorder (65%), seizures (43%), and hypotonia (38%). 23533028 2013
Entrez Id: 1756
Gene Symbol: DMD
DMD
0.130 GeneticVariation disease BEFREE Severe mental retardation in a young boy with an in-frame deletion in the dystrophin gene. 7957365 1994
Entrez Id: 7319
Gene Symbol: UBE2A
UBE2A
0.130 GeneticVariation disease BEFREE Taken together, the UBE2A deficiency syndrome in male patients with a mutation in or a deletion of UBE2A is characterized by ID, absent speech, seizures, urogenital anomalies, frequently including a small penis, and skin abnormalities, which include generalized hirsutism, low posterior hairline, myxedematous appearance, widely spaced nipples, and hair whorls. 21108393 2010
Entrez Id: 9839
Gene Symbol: ZEB2
ZEB2
0.130 GeneticVariation disease BEFREE Genotype-phenotype analysis confirmed that ZFHX1B deletions and stop mutations result in a recognizable facial dysmorphism with associated severe mental retardation and variable malformations such as Hirschsprung disease and congenital heart defects. 16053902 2005
Entrez Id: 23096
Gene Symbol: IQSEC2
IQSEC2
0.130 Biomarker disease BEFREE Microdeletion of the escape genes KDM5C and IQSEC2 in a girl with severe intellectual disability and autistic features. 25858702 2015
Entrez Id: 7319
Gene Symbol: UBE2A
UBE2A
0.130 Biomarker disease BEFREE Hitherto only five familial point mutations and four different deletions including UBE2A have been reported in the literature.We present eight additional individuals from five families with UBE2A associated ID - three males from a consanguineous family, in whom we identified a small deletion of only 7.1 kb encompassing the first three exons of UBE2A, two related males with a UBE2A missense mutation in exon 4, a patient with a de novo nonsense mutation in exon 6, and two sporadic males with larger deletions including UBE2A. 24053514 2013
Entrez Id: 3897
Gene Symbol: L1CAM
L1CAM
0.130 GeneticVariation disease BEFREE A novel missense mutation of the L1CAM gene (Xq28) is described in an adult patient affected with severe mental retardation, spastic paraparesis, adducted thumbs, agenesis of corpus callosum and microcephaly (L1 disease). 16816908 2006
Entrez Id: 23096
Gene Symbol: IQSEC2
IQSEC2
0.130 GeneticVariation disease BEFREE Expanding the phenotype of IQSEC2 mutations: truncating mutations in severe intellectual disability. 23674175 2014
Entrez Id: 1756
Gene Symbol: DMD
DMD
0.130 GeneticVariation disease BEFREE Because the DMD gene is located at Xp21.2, which is one breakpoint of the inv(X), and because its defects are rarely associated with severe mental retardation, the other clinical features of this patient were deemed likely to be associated with the opposite breakpoint at Xq22. 12145744 2002
Entrez Id: 5053
Gene Symbol: PAH
PAH
0.130 GeneticVariation disease BEFREE To test the applicability of this DNA delivery system for the correction of phenylketonuria, a metabolic disorder that causes severe mental retardation in children, we have delivered the human phenylalanine hydroxylase (PAH) gene to hepatocytes derived from a PAH-deficient mouse strain and demonstrated complete reconstitution of enzymatic activity. 8384712 1993