Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 8289
Gene Symbol: ARID1A
ARID1A
0.060 AlteredExpression disease BEFREE Loss of ARID1A/BAF250a expression in ovarian endometriosis and clear cell carcinoma. 22977660 2012
Entrez Id: 8289
Gene Symbol: ARID1A
ARID1A
0.060 GeneticVariation disease BEFREE These findings suggest that the molecular pathogenesis of low-grade uterine endometrioid carcinoma is similar to that of ovarian low-grade endometrioid and clear cell carcinoma, tumors that have previously been shown to have a high-frequency loss of expression and mutation of ARID1A. 21412130 2011
Entrez Id: 466
Gene Symbol: ATF1
ATF1
0.040 Biomarker disease BEFREE FISH revealed EWSR1-ATF1 fusion, and RT-PCR with sequencing confirmed specificity of the chimeric gene for hyalinizing clear cell carcinoma. 29434341 2018
Entrez Id: 466
Gene Symbol: ATF1
ATF1
0.040 GeneticVariation disease BEFREE More recently, new categories have been defined, like secretory carcinoma with the t(12;15) (p13;q25) ETV6-NTRK3 translocation and clear-cell carcinoma with EWSR1-ATF1 fusion. 28930752 2018
Entrez Id: 7428
Gene Symbol: VHL
VHL
0.040 GeneticVariation disease BEFREE It exhibits a different molecular signature than clear-cell carcinoma and is typically not associated with mutations in the VHL (von Hippel-Lindau) tumor suppressor gene. pRCC is less responsive to modern drugs introduced in the management of kidney cancer in the past decade. 24629521 2014
Entrez Id: 466
Gene Symbol: ATF1
ATF1
0.040 Biomarker disease BEFREE EWSR1-CREB1 and EWSR1-ATF1 are gene fusions of which one or both have now been consistently described in 5 histopathologically and behaviorally diverse neoplasms: angiomatoid fibrous histiocytoma, conventional clear cell sarcoma (of tendons and aponeuroses), clear cell sarcoma-like tumor of the gastrointestinal tract, hyalinizing clear cell carcinoma of the salivary gland, and primary pulmonary myxoid sarcoma. 22510762 2012
Entrez Id: 466
Gene Symbol: ATF1
ATF1
0.040 Biomarker disease BEFREE EWSR1-ATF1 fusion is a novel and consistent finding in hyalinizing clear-cell carcinoma of salivary gland. 21484932 2011
Entrez Id: 7428
Gene Symbol: VHL
VHL
0.040 GeneticVariation disease BEFREE Additional molecular genetic testing revealed somatic mutations and epigenetic events in genes typically associated with these specific histologic tumor types: oncocytoma harbored a second FLCN mutation (intron 12, IVS12+4 C>T), oncocytic papillary carcinoma harbored promoter methylation of FLCN, and a missense mutation in the MET gene (P246L), whereas clear cell carcinoma harbored inactivating VHL mutation (5-base pair deletion in exon 2) and VHL gene promoter methylation. 19733897 2009
Entrez Id: 7428
Gene Symbol: VHL
VHL
0.040 GeneticVariation disease BEFREE The percentage of vhl gene mutations in sporadic renal cell carcinoma was relatively low, mutations were seen more often in clear cell carcinoma and were not related to the classic clinical prognostic factors. 16387411 2006
Entrez Id: 7428
Gene Symbol: VHL
VHL
0.040 GeneticVariation disease BEFREE The relationship between the VHL gene and clear cell carcinoma, MET and papillary carcinoma, and the families of genes that they regulate, continues to be unraveled. 11493766 2001
Entrez Id: 5728
Gene Symbol: PTEN
PTEN
0.030 AlteredExpression disease BEFREE Furthermore, all three components including clear cell carcinoma had loss of PTEN and ARID1A expression. 28667682 2017
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.030 AlteredExpression disease BEFREE Vascular endothelial growth factor serum levels were higher in patients with clear cell carcinoma. 28574932 2017
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.030 Biomarker disease BEFREE Prevalence and clinical significance of mammalian target of rapamycin phosphorylation (p-mTOR) and vascular endothelial growth factor (VEGF) in clear cell carcinoma of the ovary. 23464458 2012
Entrez Id: 5728
Gene Symbol: PTEN
PTEN
0.030 AlteredExpression disease BEFREE PTEN promoter methylation and LOH of 10q22-23 locus in PTEN expression of ovarian clear cell adenocarcinomas. 19007975 2009
Entrez Id: 5728
Gene Symbol: PTEN
PTEN
0.030 AlteredExpression disease LHGDN PTEN promoter methylation and LOH of 10q22-23 locus in PTEN expression of ovarian clear cell adenocarcinomas. 19007975 2009
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.030 AlteredExpression disease LHGDN Therapeutic strategy targeting the mTOR-HIF-1alpha-VEGF pathway in ovarian clear cell adenocarcinoma. 19121088 2009
Entrez Id: 5728
Gene Symbol: PTEN
PTEN
0.030 Biomarker disease BEFREE Loss of heterozygosity on 10q23.3 and mutation of the tumor suppressor gene PTEN in benign endometrial cyst of the ovary: possible sequence progression from benign endometrial cyst to endometrioid carcinoma and clear cell carcinoma of the ovary. 11156411 2000
Entrez Id: 6928
Gene Symbol: HNF1B
HNF1B
0.020 Biomarker disease BEFREE Recently, hepatocyte nuclear factor-1 beta (HNF-1β), a marker for clear cell carcinoma, has also been shown to be positive in mesonephric carcinomas. 31361605 2019
Entrez Id: 2099
Gene Symbol: ESR1
ESR1
0.020 Biomarker disease BEFREE A total of 43 high-grade endometrial carcinoma cases initially classified as pure high-grade endometrioid carcinoma (n=32), mixed high-grade endometrioid carcinoma/serous carcinoma (n=9) and mixed high-grade endometrioid carcinoma/clear cell carcinoma (n=2) were retrospectively stained with a panel of immunostains, including antibodies for p53, p16, estrogen receptor, and mammaglobin. 28984301 2018
Entrez Id: 53340
Gene Symbol: SPA17
SPA17
0.020 AlteredExpression disease BEFREE Serum concentrations were higher in patients with Sp17 tissue expression, and the highest concentrations were noted among patients with serous and clear cell adenocarcinomas. 30309325 2018
Entrez Id: 2719
Gene Symbol: GPC3
GPC3
0.020 Biomarker disease BEFREE We sought to evaluate the use of napsin A and glypican 3 staining to distinguish clear cell carcinoma from other high-grade endometrial cancers. 30036224 2018
Entrez Id: 84692
Gene Symbol: CCDC54
CCDC54
0.020 AlteredExpression disease BEFREE Serum concentrations were higher in patients with Sp17 tissue expression, and the highest concentrations were noted among patients with serous and clear cell adenocarcinomas. 30309325 2018
Entrez Id: 2099
Gene Symbol: ESR1
ESR1
0.020 Biomarker disease BEFREE A combination of NAPSA and ESR1 had a sensitivity of 97.9% (95% CI, 89%-99%) and specificity of 72.2% (95% CI, 46%-90%) for ESC versus clear cell carcinoma. 27167671 2017
Entrez Id: 1385
Gene Symbol: CREB1
CREB1
0.020 Biomarker disease BEFREE Recurrent gene fusions involving EWSR1 with members of the cAMP response element binding protein (CREB) family (ATF1 and CREB1) have been reported in a diverse group of tumors including angiomatoid fibrous histiocytoma (AFH), soft tissue and gastrointestinal clear cell sarcoma, primary pulmonary myxoid sarcoma, and hyalinizing clear cell carcinoma of salivary gland. 28009602 2017
Entrez Id: 3569
Gene Symbol: IL6
IL6
0.020 Biomarker disease BEFREE Antitumor effects of interleukin-6 (IL-6)/interleukin-6 receptor (IL-6R) signaling pathway inhibition in clear cell carcinoma of the ovary. 25856562 2016