Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7465
Gene Symbol: WEE1
WEE1
0.010 AlteredExpression group BEFREE Upregulated WEE1 expression was observed in GIST tissues and correlated with tumor size, mitotic count, and risk grade. 31197522 2020
Entrez Id: 4585
Gene Symbol: MUC4
MUC4
0.010 GeneticVariation group BEFREE All tumors were positive for vimentin, CD99 and cytokeratin (patchy), while negative for markers of solid pseudopapillary neoplasm, neuroendocrine, acinar, myogenic/rhabdoid, vascular, melanocytic, or lymphoid differentiation, gastrointestinal stromal tumor as well as MUC4. 31383964 2020
Entrez Id: 23269
Gene Symbol: MGA
MGA
0.010 GeneticVariation group BEFREE WES identified 30 differential cancer-associated genes mutated only in high-grade GISTs; Sanger sequencing confirmed ten relevant differential oncogenic mutations in nine genes (MGA, ARID1A, LATS2, MAX, PIK3CA, RB1, RPS6KB2, SDHA, and SETD2). 31570771 2020
Entrez Id: 149420
Gene Symbol: PDIK1L
PDIK1L
0.010 Biomarker group BEFREE Our findings suggest that combinatorial inhibition of CK2 and KIT warrants evaluation as a novel therapeutic strategy in GIST, especially in imatinib-resistant GIST. 31776458 2020
Entrez Id: 11140
Gene Symbol: CDC37
CDC37
0.010 Biomarker group BEFREE Treatment with a specific CK2 inhibitor, CX4945, leads to CDC37 dephosphorylation and inhibits KIT signalling in imatinib-sensitive and in imatinib-resistant GIST cell lines. 31776458 2020
Entrez Id: 55726
Gene Symbol: INTS13
INTS13
0.010 Biomarker group BEFREE Histologies were; Gastrointestinal stromal tumors (7), desmoid (4), spindle cell tumor (2), dedifferentiated liposarcoma (2), and nonseminomatous germ cell tumor (1). 31846095 2020
Entrez Id: 11184
Gene Symbol: MAP4K1
MAP4K1
0.010 GeneticVariation group BEFREE Sunitinib, a multi-receptor tyrosine kinase (RTK) inhibitor approved for the management of gastrointestinal stromal tumors (GISTs), renal cell carcinoma (RCC), and pancreatic cancer, has been reported to inhibit HPK1 <i>in vitro</i> In this report, we describe the crystal structures of the native HPK1 kinase domain in both nonphosphorylated and doubly phosphorylated states, in addition to a double phosphomimetic mutant (T165E,S171E), each complexed with sunitinib at 2.17-3.00-Å resolutions. 31018963 2019
Entrez Id: 2305
Gene Symbol: FOXM1
FOXM1
0.010 AlteredExpression group BEFREE The xenograft tumor data further confirmed the regulated effect of HIF-1α and HIF-2α on FoxM1, and demonstrated that the simultaneous downregulation of both HIF-1α and HIF-2α inhibited GIST tumor growth. 29948390 2019
Entrez Id: 201633
Gene Symbol: TIGIT
TIGIT
0.010 AlteredExpression group BEFREE In the RNAseq analysis, TIGIT expression was significantly increased in IM-PD/SU-treated GISTs compared to IM-PD (p = 0.01). 31607749 2019
Entrez Id: 8864
Gene Symbol: PER2
PER2
0.010 Biomarker group BEFREE Patients with advanced GIST showed better prognosis with the optimal use of imatinib, along with active surgical intervention and more common use of subsequent TKIs in period 2. 30693663 2019
Entrez Id: 2004
Gene Symbol: ELK3
ELK3
0.010 Biomarker group BEFREE The coincidence of GIST and NET is almost pathognomonic for NF1 and should raise a suspicion of this rare disorder in clinical practice. 31301733 2019
Entrez Id: 2053
Gene Symbol: EPHX2
EPHX2
0.010 GeneticVariation group BEFREE This study aimed to evaluate the feasibility of CEH-EUS by using perfusion analysis software for distinguishing among SETs and predicting the malignancy risk of GISTs. 30400724 2019
Entrez Id: 3659
Gene Symbol: IRF1
IRF1
0.010 AlteredExpression group BEFREE Analysis of the Gene Expression Omnibus database GIST samples pre- and post-treatment confirmed that imatinib downregulates PD-L1 and IRF1 expression through the inhibition of KIT and PDGFRA, thus contributing to counteract the suppressed adaptive immune response against GIST. 31428517 2019
Entrez Id: 114783
Gene Symbol: LMTK3
LMTK3
0.010 Biomarker group BEFREE Silencing of LMTK3 decreased cell viability and increased cell death in KIT-dependent, but not KIT-independent GIST and melanoma cell lines. 30242244 2019
Entrez Id: 3371
Gene Symbol: TNC
TNC
0.010 AlteredExpression group BEFREE However, few reports exist on TNC expression in gastrointestinal stromal tumors (GISTs). 30633201 2019
Entrez Id: 3725
Gene Symbol: JUN
JUN
0.010 AlteredExpression group BEFREE PRKCQ, JUN, and the Hippo pathway coordinately regulate GIST cyclin D1 expression. 31371779 2019
Entrez Id: 5770
Gene Symbol: PTPN1
PTPN1
0.010 AlteredExpression group BEFREE Immunohistochemical analysis of the phosphatase PTPN1 (<i>n</i> = 117) revealed that the GIST patients with high PTPN1 expression had low chances of developing metastasis. 30804049 2019
Entrez Id: 9547
Gene Symbol: CXCL14
CXCL14
0.010 Biomarker group BEFREE PDGFRA-mutant GISTs expressed many chemokines, such as CXCL14, at a significantly higher level when compared to KIT-mutant GISTs and exhibited more diverse driver-derived neoepitope:HLA binding, both of which may contribute to PDGFRA-mutant GIST immunogenicity. 30762585 2019
Entrez Id: 5140
Gene Symbol: PDE3B
PDE3B
0.010 AlteredExpression group BEFREE GISTs expressed PDE3A and PDE3B frequently compared with other human normal or cancerous tissues both in the <i>in silico</i> database and the TMAs. 30530703 2019
Entrez Id: 5970
Gene Symbol: RELA
RELA
0.010 Biomarker group BEFREE Taken together, these results demonstrate the existence of a nuclear KIT-driven NFKBIB-RELA-KIT autoregulatory loop in GIST tumorigenesis, which are potential targets for developing combination therapy to overcome imatinib-resistant of KIT-expressing GISTs. 31363162 2019
Entrez Id: 2248
Gene Symbol: FGF3
FGF3
0.010 AlteredExpression group BEFREE FGF3/FGF4 duplication was associated with high expression of FGF4, both at mRNA and protein level, a growth factor normally not expressed in adult tissues or in KIT/PDGFRA-mutated GIST. 30887595 2019
Entrez Id: 6275
Gene Symbol: S100A4
S100A4
0.010 AlteredExpression group BEFREE Patients with weak S100A4 expression had a relatively longer disease-free survival compared to patients with strong S100A4 expression.Therefore, S100A4 expression is a putative marker for tumor progression and an adverse prognosis in GISTs. 31474194 2019
Entrez Id: 2047
Gene Symbol: EPHB1
EPHB1
0.010 Biomarker group BEFREE The coincidence of GIST and NET is almost pathognomonic for NF1 and should raise a suspicion of this rare disorder in clinical practice. 31301733 2019
Entrez Id: 10413
Gene Symbol: YAP1
YAP1
0.010 Biomarker group BEFREE Our results highlight the potential use of compounds targeting PDE3A or YAP in combined multitherapy to tackle GIST resistance. 30956759 2019
Entrez Id: 889
Gene Symbol: KRIT1
KRIT1
0.010 Biomarker group BEFREE Sarcoma patients were significantly more likely to be interested in CAM after the diagnosis than patients with GIST. 31331555 2019