Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 931
Gene Symbol: MS4A1
MS4A1
0.010 AlteredExpression disease BEFREE Subcellular epithelial protein (HMGB1, p53, RUNX3) expression, alongside expression of CD20, CD4, CD8 and Foxp3 to characterise stromal B lymphocyte, and helper, cytotoxic and regulatory T-lymphocyte cell infiltrate, respectively, was assessed by immunohistochemistry in 218 human tissue samples including normal oesophageal/gastric biopsies (n = 39), BO (non-dysplasia, dysplasia, non-dysplastic background from progressors to dysplasia or cancer, n = 121) and oesophageal adenocarcinoma (n = 58). 31831860 2020
Entrez Id: 54474
Gene Symbol: KRT20
KRT20
0.010 AlteredExpression disease BEFREE Subcellular epithelial protein (HMGB1, p53, RUNX3) expression, alongside expression of CD20, CD4, CD8 and Foxp3 to characterise stromal B lymphocyte, and helper, cytotoxic and regulatory T-lymphocyte cell infiltrate, respectively, was assessed by immunohistochemistry in 218 human tissue samples including normal oesophageal/gastric biopsies (n = 39), BO (non-dysplasia, dysplasia, non-dysplastic background from progressors to dysplasia or cancer, n = 121) and oesophageal adenocarcinoma (n = 58). 31831860 2020
Entrez Id: 3146
Gene Symbol: HMGB1
HMGB1
0.010 Biomarker disease BEFREE Subcellular epithelial protein (HMGB1, p53, RUNX3) expression, alongside expression of CD20, CD4, CD8 and Foxp3 to characterise stromal B lymphocyte, and helper, cytotoxic and regulatory T-lymphocyte cell infiltrate, respectively, was assessed by immunohistochemistry in 218 human tissue samples including normal oesophageal/gastric biopsies (n = 39), BO (non-dysplasia, dysplasia, non-dysplastic background from progressors to dysplasia or cancer, n = 121) and oesophageal adenocarcinoma (n = 58). 31831860 2020
Entrez Id: 50943
Gene Symbol: FOXP3
FOXP3
0.010 Biomarker disease BEFREE Subcellular epithelial protein (HMGB1, p53, RUNX3) expression, alongside expression of CD20, CD4, CD8 and Foxp3 to characterise stromal B lymphocyte, and helper, cytotoxic and regulatory T-lymphocyte cell infiltrate, respectively, was assessed by immunohistochemistry in 218 human tissue samples including normal oesophageal/gastric biopsies (n = 39), BO (non-dysplasia, dysplasia, non-dysplastic background from progressors to dysplasia or cancer, n = 121) and oesophageal adenocarcinoma (n = 58). 31831860 2020
Entrez Id: 100187907
Gene Symbol: TRAP
TRAP
0.010 Biomarker disease BEFREE Phase II Feasibility and Biomarker Study of Neoadjuvant Trastuzumab and Pertuzumab With Chemoradiotherapy for Resectable Human Epidermal Growth Factor Receptor 2-Positive Esophageal Adenocarcinoma: TRAP Study. 31809243 2020
Entrez Id: 22943
Gene Symbol: DKK1
DKK1
0.010 Biomarker disease BEFREE Dickkopf-1 (DKK1) promotes tumor growth via Akt-phosphorylation and independently of Wnt-axis in Barrett's associated esophageal adenocarcinoma. 30906632 2019
Entrez Id: 4103
Gene Symbol: MAGEA4
MAGEA4
0.010 Biomarker disease BEFREE The National Cancer Data Base was queried for patients with cT1-4-N0-3 M0 esophageal adenocarcinoma undergoing trimodality therapy from 2004 to 2013 (n = 2445). 30597022 2019
Entrez Id: 406899
Gene Symbol: MIR106A
MIR106A
0.010 Biomarker disease BEFREE This comprehensive data demonstrated the importance of miR-17-92 cluster and miR-106a for progression as well as LNM in OAC indicating that those might be feasible prognostic biomarkers. 31431687 2019
Entrez Id: 6317
Gene Symbol: SERPINB3
SERPINB3
0.010 Biomarker disease BEFREE Here, we report SCCA1 in relation to the immune and peritumoral adipose tissue microenvironment in early and advanced esophageal adenocarcinoma (EAC). 30825353 2019
Entrez Id: 26122
Gene Symbol: EPC2
EPC2
0.010 GeneticVariation disease BEFREE Representing the Barrett's sequence, we used normal esophageal squamous epithelium (EPC-1, EPC-2), metaplasia (CP-A) and dysplasia (CP-B) to esophageal adenocarcinoma (EAC) cell lines (OE33, OE19) and primary specimens of squamous epithelium, metaplasia and EAC. 30841855 2019
Entrez Id: 727897
Gene Symbol: MUC5B
MUC5B
0.010 Biomarker disease BEFREE AGR2 preferentially engages with MUC-5 as a primary client and is coexpressed with the acidic mucin in Barrett's esophagus and esophageal adenocarcinoma tissue. 31436131 2019
Entrez Id: 5670
Gene Symbol: PSG2
PSG2
0.010 Biomarker disease BEFREE Elevated Pretreatment CEA and CA19-9 Levels are Related to Early Treatment Failure in Esophageal Adenocarcinoma. 30724779 2019
Entrez Id: 1048
Gene Symbol: CEACAM5
CEACAM5
0.010 AlteredExpression disease BEFREE Pretreatment elevated CEA and CA19-9 levels were significantly associated with early treatment failure and decreased overall survival in this esophageal adenocarcinoma patient cohort treated with curative intent. 30724779 2019
Entrez Id: 406919
Gene Symbol: MIR130A
MIR130A
0.010 Biomarker disease BEFREE Upregulation of circulating miR130a is correlated with development of Barrett's esophagus and esophageal adenocarcinoma. 30588024 2019
Entrez Id: 693122
Gene Symbol: MIR421
MIR421
0.010 Biomarker disease BEFREE MiR-421 expression might serve as a valuable prognostic biomarker in patients with ESAD. 31115005 2019
Entrez Id: 6060
Gene Symbol: RNU1-4
RNU1-4
0.010 GeneticVariation disease BEFREE All the digestive tract pan-adenocarcinomas showed differential expression of three snRNAs: the up-regulated RNU1-106 P and RNU6-850 P and the down-regulated RNU6-529 P. Interestingly, RNU6-101 P appeared to be a risk factor for esophageal adenocarcinoma (ESAD) and RNVU1-4 was potentially a protective factor for stomach adenocarcinoma (STAD) survival. 30455130 2019
Entrez Id: 81631
Gene Symbol: MAP1LC3B
MAP1LC3B
0.010 Biomarker disease BEFREE Correction to: LC3B globular structures correlate with survival in esophageal adenocarcinoma. 31795977 2019
Entrez Id: 8847
Gene Symbol: DLEU2
DLEU2
0.010 AlteredExpression disease BEFREE Upregulated long-non-coding RNA DLEU2 exon 9 expression was an independent indicator of unfavorable overall survival in patients with esophageal adenocarcinoma. 30849637 2019
Entrez Id: 1087
Gene Symbol: CEACAM7
CEACAM7
0.010 Biomarker disease BEFREE Elevated Pretreatment CEA and CA19-9 Levels are Related to Early Treatment Failure in Esophageal Adenocarcinoma. 30724779 2019
Entrez Id: 5176
Gene Symbol: SERPINF1
SERPINF1
0.010 Biomarker disease BEFREE Representing the Barrett's sequence, we used normal esophageal squamous epithelium (EPC-1, EPC-2), metaplasia (CP-A) and dysplasia (CP-B) to esophageal adenocarcinoma (EAC) cell lines (OE33, OE19) and primary specimens of squamous epithelium, metaplasia and EAC. 30841855 2019
Entrez Id: 6352
Gene Symbol: CCL5
CCL5
0.010 Biomarker disease BEFREE Despite the abundance of Th1 chemokines RANTES (CCL5) and MIP-1α (CCL3) in OAC tumour, enrichments of intratumoural T cells expressing corresponding receptors were not observed. 30834503 2019
Entrez Id: 26871
Gene Symbol: RNU1-1
RNU1-1
0.010 GeneticVariation disease BEFREE All the digestive tract pan-adenocarcinomas showed differential expression of three snRNAs: the up-regulated RNU1-106 P and RNU6-850 P and the down-regulated RNU6-529 P. Interestingly, RNU6-101 P appeared to be a risk factor for esophageal adenocarcinoma (ESAD) and RNVU1-4 was potentially a protective factor for stomach adenocarcinoma (STAD) survival. 30455130 2019
Entrez Id: 688
Gene Symbol: KLF5
KLF5
0.010 Biomarker disease BEFREE Considering Barrett's esophagus (BE) and esophageal adenocarcinoma's (EAC) histopathological similarities to intestinal epithelium, we sought to determine KLF5's role in BE and EAC, as well as KLF5's possible connection to the sonic hedgehog (SHH) pathway which is highly active in BE and EAC development. 31401336 2019
Entrez Id: 60312
Gene Symbol: AFAP1
AFAP1
0.010 AlteredExpression disease BEFREE Actin filament-associated protein 1 antisense RNA 1 (AFAP1-AS1) is a 6810-nt lncRNA located on chromosome 4p16.1 that was first reported to be upregulated in esophageal adenocarcinoma tissues and cell lines. 31069893 2019
Entrez Id: 495
Gene Symbol: ATP4A
ATP4A
0.010 GeneticVariation disease BEFREE Recent clinical studies revealed that proton-pump inhibitors (PPIs) but not H2 receptor antagonists (H2RAs) were associated with a decreased risk of esophageal adenocarcinoma. 30705106 2019