Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 1121
Gene Symbol: CHM
CHM
0.010 Biomarker disease BEFREE When c-TTE and/or c-TCD were used, the rate of residual RLSs detected in patients who underwent PFO closure was 26.32%, which was significantly different than the rate detected using TEE (P < .05)c-TTE and c-TCD showed equivalent sensitivity in evaluating transcatheter closure of a PFO. c-TTE could be a more cost-effective and reliable method to detect the residual shunt after PFO closure. 30681631 2019
Entrez Id: 4879
Gene Symbol: NPPB
NPPB
0.010 Biomarker disease BEFREE Cutoff values of BNP, E/e', and left atrial appendage flow velocity capable of distinguishing CS without large PFO from noncardioembolic stroke were 65.0 pg/mL (sensitivity 55.3%; specificity 70.9%), 13.0 (45.5%; 68.0%), and 46.0 cm/s (37.1%; 87.5%), respectively. 31694016 2019
Entrez Id: 23530
Gene Symbol: NNT
NNT
0.010 Biomarker disease BEFREE NNT for stroke was 37 and NNH for AF 49, indicating a net clinical benefit of PFO closure. 29644412 2018
Entrez Id: 100128998
Gene Symbol: C20orf181
C20orf181
0.010 Biomarker disease BEFREE Tissue Plasminogen Activator to Treat a Stroke after Foam Sclerotherapy in a Woman with a Patent Foramen Ovale. 29402614 2018
Entrez Id: 4488
Gene Symbol: MSX2
MSX2
0.010 GeneticVariation disease BEFREE Between January 2012 and August 2016, 151 patients (mean age 41 ± 11 years) who had suffered from a cryptogenic thromboembolic event underwent transcatheter PFO closure with the PFM Nit-Occlud PFO device. 29068141 2018
Entrez Id: 477
Gene Symbol: ATP1A2
ATP1A2
0.010 GeneticVariation disease BEFREE We describe the case of one patient with pure sporadic hemiplegic migraine (SHM) with a novel ATP1A2 gene variant and a large patent foramen ovale (PFO) with atrial septal aneurysm. 29867740 2018
Entrez Id: 85474
Gene Symbol: LBX2
LBX2
0.010 Biomarker disease BEFREE We identified LBX2 for the first time as a pathogenic gene of ASDII. 29669692 2018
Entrez Id: 116449
Gene Symbol: CLNK
CLNK
0.010 GeneticVariation disease BEFREE The first randomized clinical trial of patent foramen ovale (PFO) closure for prevention of migraine, the MIST trial, showed negative results. 28283958 2017
Entrez Id: 53407
Gene Symbol: STX18
STX18
0.010 GeneticVariation disease BEFREE However, a region on chromosome 4p16, adjacent to the MSX1 and STX18 genes, was associated (P = 9.5 × 10⁻⁷) with the risk of ostium secundum atrial septal defect (ASD) in the discovery cohort (N = 340 cases), and this association was replicated in a further 417 ASD cases and 2,520 controls (replication P = 5.0 × 10⁻⁵; odds ratio (OR) in replication cohort = 1.40, 95% confidence interval (CI) = 1.19-1.65; combined P = 2.6 × 10⁻¹⁰). 23708191 2013
Entrez Id: 4487
Gene Symbol: MSX1
MSX1
0.010 GeneticVariation disease BEFREE However, a region on chromosome 4p16, adjacent to the MSX1 and STX18 genes, was associated (P = 9.5 × 10⁻⁷) with the risk of ostium secundum atrial septal defect (ASD) in the discovery cohort (N = 340 cases), and this association was replicated in a further 417 ASD cases and 2,520 controls (replication P = 5.0 × 10⁻⁵; odds ratio (OR) in replication cohort = 1.40, 95% confidence interval (CI) = 1.19-1.65; combined P = 2.6 × 10⁻¹⁰). 23708191 2013
Entrez Id: 345
Gene Symbol: APOC3
APOC3
0.010 GeneticVariation disease BEFREE Three different polymorphisms located in the prothrombin, F2 (20210G/A), and apolipoprotein-C3 (-641A/C and -455T/A) genes were significantly associated with ICVD and PFO. 22784820 2013
Entrez Id: 55349
Gene Symbol: CHDH
CHDH
0.010 GeneticVariation disease BEFREE Thus, the common GATA4 variant S377G is likely to be relatively benign in terms of its participation in CHD and PFO/Stroke. 21673957 2011
Entrez Id: 2152
Gene Symbol: F3
F3
0.010 GeneticVariation disease BEFREE We identified a male Polish patient with a very rare minor homozygous GG genotype of the tissue factor (TF) +5466A>G polymorphism, who within two months experienced a transient ischemic attack (TIA) and ischemic stroke of unknown origin associated with the presence of patent foramen ovale below 40 years of age. 19203804 2011
Entrez Id: 92579
Gene Symbol: G6PC3
G6PC3
0.010 GeneticVariation disease BEFREE We demonstrate that secundum atrial septal defect, patent ductus arteriosus and valvular defects are the most frequent cardiac anomalies in SCN4. 20717171 2011
Entrez Id: 5973
Gene Symbol: RENBP
RENBP
0.010 GeneticVariation disease BEFREE Migraine, particularly with aura, is an independent risk factor for IS, and the patient's IS risk is probably affected by other individual risk factors (e.g., age, genetic predisposition to thrombosis, presence of patent foramen ovale or enhanced platelet aggregation) which seem to be over-represented in migraine patients. 18545887 2008
Entrez Id: 7450
Gene Symbol: VWF
VWF
0.010 Biomarker disease BEFREE Purported mechanisms for migraine-associated stroke include involvement of the vasculature (including vasospasm, arterial dissection and small vessel arteriopathy), hypercoagulability (elevated von Willebrand Factor, platelet activation) and elevated risk of cardioembolism (patent foramen ovale, atrial septal aneurysm). 16097850 2005
Entrez Id: 1351
Gene Symbol: COX8A
COX8A
0.010 GeneticVariation disease BEFREE We assessed the occurrence of several prothrombotic states (factor V Leiden, prothrombin G20210A, deficiencies in protein S, protein C and antithrombin, lupus anticoagulant, anticardiolipin antibodies, elevated factor VIII, resistance to activated protein C) and classical risk factors for venous thrombosis in 57 adult patients with cryptogenic stroke and patent foramen ovale and in 104 matched controls. 12695749 2003
Entrez Id: 64805
Gene Symbol: P2RY12
P2RY12
0.020 Biomarker disease BEFREE After finding that the thienopyridines clopidogrel and prasugrel reduced migraine headache (MHA) symptoms in some patients with patent foramen ovale (PFO), this small pilot study was undertaken to determine whether ticagrelor, a nonthienopyridine P2Y12 inhibitor, would have similar MHA effects and might be better suited for a future randomized trial. 30478067 2018
Entrez Id: 64805
Gene Symbol: P2RY12
P2RY12
0.020 Biomarker disease BEFREE Successful P2Y12 platelet inhibition seemed to reduce MHA symptoms in some patients with PFO, suggesting a platelet-based mechanism/trigger. 30478066 2018
Entrez Id: 4524
Gene Symbol: MTHFR
MTHFR
0.020 GeneticVariation disease BEFREE Significantly more frequent prevalence of PFO in migraine patients with aura (with homozygous recessive genotype of MTHFR probably suggests their common genetic basis. 23161188 2013
Entrez Id: 4524
Gene Symbol: MTHFR
MTHFR
0.020 GeneticVariation disease BEFREE This study investigated if in uncomplicated hypertensive subjects (HTs) with isolated PFO and H-Hcys, a different MTHFR polymorphism pattern for C667→T gene mutation could influence PFO management and to reduce the CV risk. 20696177 2010
Entrez Id: 414
Gene Symbol: ARSD
ARSD
0.030 Biomarker disease BEFREE Conscious sedation for transcatheter implantation of ASO is a feasible, safe, and efficient technique, allowing successful PFO and ASD closure in the majority of patients. 29131286 2018
Entrez Id: 414
Gene Symbol: ARSD
ARSD
0.030 Biomarker disease BEFREE Twenty-one cases of infective endocarditis after atrial defect device closure have been reported in the literature (13 ostium secundum ASD and 8 patent foramen ovale).Seven pediatric cases were reported. 27641431 2017
Entrez Id: 414
Gene Symbol: ARSD
ARSD
0.030 Biomarker disease BEFREE However, in a follow up study of German Caucasians no association was found with either PFO or ASD. 21673957 2011
Entrez Id: 2147
Gene Symbol: F2
F2
0.040 GeneticVariation disease BEFREE Three different polymorphisms located in the prothrombin, F2 (20210G/A), and apolipoprotein-C3 (-641A/C and -455T/A) genes were significantly associated with ICVD and PFO. 22784820 2013