Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 54892
Gene Symbol: NCAPG2
NCAPG2
0.070 Biomarker disease BEFREE We aimed to evaluate the GeneXpert® MTB/RIF test for the diagnosis of extrapulmonary tuberculosis. 26654321 2016
Entrez Id: 80196
Gene Symbol: RNF34
RNF34
0.070 Biomarker disease BEFREE Xpert MTB/RIF assay for the diagnosis of extrapulmonary tuberculosis: a systematic review and meta-analysis. 24696113 2014
Entrez Id: 54509
Gene Symbol: RHOF
RHOF
0.070 Biomarker disease BEFREE Xpert MTB/RIF assay for the diagnosis of extrapulmonary tuberculosis: a systematic review and meta-analysis. 24696113 2014
Entrez Id: 3458
Gene Symbol: IFNG
IFNG
0.060 GeneticVariation disease BEFREE This study was performed to meta-statistically analyze the data and draw a more accurate conclusion regarding the association of IFN-γ +874 A > T gene polymorphism and EPTB susceptibility. 30825502 2019
Entrez Id: 3458
Gene Symbol: IFNG
IFNG
0.060 Biomarker disease BEFREE Interferon-gamma response to the treatment of active pulmonary and extra-pulmonary tuberculosis. 28911359 2017
Entrez Id: 3458
Gene Symbol: IFNG
IFNG
0.060 Biomarker disease BEFREE Secretion of IFN-γ Associated with Galectin-9 Production by Pleural Fluid Cells from a Patient with Extrapulmonary Tuberculosis. 28657598 2017
Entrez Id: 3458
Gene Symbol: IFNG
IFNG
0.060 AlteredExpression disease BEFREE The higher rate of +874A (known to correlate with lower IFN-γ expression) in the extrapulmonary TB subgroup suggests a sufficient IFN-γ expression to be not only an important factor for the onset of TB disease but also for limiting its dissemination to lungs. 23737189 2013
Entrez Id: 3458
Gene Symbol: IFNG
IFNG
0.060 Biomarker disease BEFREE The average plasma concentration of IFN-gamma among patients with tuberculosis was significantly lower than in the control group, and were lower in the EPTB group than in the group with PTB, suggesting a relationship of low plasma levels of this cytokine with active tuberculosis and the progression to more serious forms of the disease. 20353805 2010
Entrez Id: 3458
Gene Symbol: IFNG
IFNG
0.060 Biomarker disease BEFREE Usefulness of the whole-blood interferon-gamma release assay for diagnosis of extrapulmonary tuberculosis. 19070449 2009
Entrez Id: 58155
Gene Symbol: PTBP2
PTBP2
0.050 GeneticVariation disease BEFREE Nevertheless, studies describing immune determinants of pulmonary or extrapulmonary TB (PTB or EPTB, respectively) in children are scarce. 31299414 2019
Entrez Id: 5725
Gene Symbol: PTBP1
PTBP1
0.050 GeneticVariation disease BEFREE Nevertheless, studies describing immune determinants of pulmonary or extrapulmonary TB (PTB or EPTB, respectively) in children are scarce. 31299414 2019
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.050 Biomarker disease BEFREE Pleural tuberculosis is one of the most frequent forms of extra-pulmonary tuberculosis observed in patients infected with <i>Mycobacterium tuberculosis.</i> Tumor Necrosis Factor (TNF) is a crucial cytokine needed to control tuberculosis infection that remains a leading cause of morbidity and mortality worldwide. 29973541 2018
Entrez Id: 5725
Gene Symbol: PTBP1
PTBP1
0.050 AlteredExpression disease BEFREE Similar trends were observed from the plasma of patients where patients with PTB showed significantly higher level of TNF-α compared to EPTB and healthy control groups. 29515555 2018
Entrez Id: 58155
Gene Symbol: PTBP2
PTBP2
0.050 AlteredExpression disease BEFREE Similar trends were observed from the plasma of patients where patients with PTB showed significantly higher level of TNF-α compared to EPTB and healthy control groups. 29515555 2018
Entrez Id: 5725
Gene Symbol: PTBP1
PTBP1
0.050 Biomarker disease BEFREE By binary logistic regression, we observed that female gender (O.R.(95% C.I.): 1.95 (1.08-3.50), p < 0.05), Asian origin (5.70 (2.00-16.24), p < 0.001) and multimorbidity (6.42 (2.37-17.41), p < 0.001) were significantly associated to the development of EPTB compared to PTB. 31825907 2018
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.050 GeneticVariation disease BEFREE When we stratified available data according to type of disease, we found that TNF-α -238 G/A and -308 G/A polymorphisms were significantly correlated with the risk of extrapulmonary tuberculosis (EPTB), while the -857 C/T polymorphism was significantly correlated with the risk of pulmonary tuberculosis (PTB). 30295952 2018
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.050 AlteredExpression disease BEFREE <b>Results:</b> While all of the studied cytokine secretions varied after <i>in vitro</i> infection, higher levels of TNF-α and VEGF secretions were observed <i>in vitro</i> in the infected macrophages respectively in the PTB and EPTB infecting clinical isolates. 29515555 2018
Entrez Id: 58155
Gene Symbol: PTBP2
PTBP2
0.050 Biomarker disease BEFREE By binary logistic regression, we observed that female gender (O.R.(95% C.I.): 1.95 (1.08-3.50), p < 0.05), Asian origin (5.70 (2.00-16.24), p < 0.001) and multimorbidity (6.42 (2.37-17.41), p < 0.001) were significantly associated to the development of EPTB compared to PTB. 31825907 2018
Entrez Id: 58155
Gene Symbol: PTBP2
PTBP2
0.050 GeneticVariation disease BEFREE SNP rs1800972 was associated with extrapulmonary tuberculosis (EPTB) in a codominant model (genotype CG, P = 0.037, OR 4.82; 95% CI: 0.92-47.42; statistical power, 82%), but not PTB (P = 0.101) in a Mexican population. 23953711 2014
Entrez Id: 5725
Gene Symbol: PTBP1
PTBP1
0.050 GeneticVariation disease BEFREE SNP rs1800972 was associated with extrapulmonary tuberculosis (EPTB) in a codominant model (genotype CG, P = 0.037, OR 4.82; 95% CI: 0.92-47.42; statistical power, 82%), but not PTB (P = 0.101) in a Mexican population. 23953711 2014
Entrez Id: 5725
Gene Symbol: PTBP1
PTBP1
0.050 Biomarker disease BEFREE Clustered and unique EPTB notifications showed a seasonal trend that was absent in clustered and unique PTB notifications. 24125452 2013
Entrez Id: 58155
Gene Symbol: PTBP2
PTBP2
0.050 Biomarker disease BEFREE Clustered and unique EPTB notifications showed a seasonal trend that was absent in clustered and unique PTB notifications. 24125452 2013
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.050 GeneticVariation disease BEFREE However, combined TNF-α/IL-10 low producer genotypes appeared to have protect effect to pTB (OR = 0.44, 95% CI, 0.21-0.89; Pc = 0.04) and epTB (OR = 0.26, 95% CI, 0.1-0.62; Pc = 0.0028). 21609779 2011
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.050 Biomarker disease BEFREE Compared with the control sample, the expression of 16 genes, including those for tumour necrosis factor (TNF)-alpha and cathepsin W, was increased, and the expression of 45 genes including that for TNF-receptor superfamily member 7 (TNFRSF7), was decreased in the extrapulmonary tuberculosis patients. 16916327 2006
Entrez Id: 5027
Gene Symbol: P2RX7
P2RX7
0.040 GeneticVariation disease BEFREE This meta-analysis indicates that the C allele of P2X7 receptor gene 1513A/C polymorphism is a risk factor for pulmonary tuberculosis in Asians, while not in Africans or Latinos and a risk for extra-pulmonary tuberculosis. 24650918 2014