Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.090 GeneticVariation disease BEFREE Novel mechanistic insights into ectodomain shedding of EGFR Ligands Amphiregulin and TGF-α: impact on gastrointestinal cancers driven by secondary bile acids. 24520077 2014
Entrez Id: 4292
Gene Symbol: MLH1
MLH1
0.090 GeneticVariation disease BEFREE Cancer data from 1980 to 2007 were obtained from the Familial Gastrointestinal Cancer Registry in Toronto for 321 persons with known MMR mutations: mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli) (MLH1); mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli) (MSH2); mutS homolog 6 (E. coli) (MSH6); and PMS2 postmeiotic segregation increased 2 (S. cerevisiae) (PMS2). 22883484 2013
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.090 GeneticVariation disease BEFREE Given recent reports of TKI-responsive cases of esophageal and pancreatic cancer, this study was designed to determine the prevalence of EGFR mutations in these gastrointestinal cancers. 16857803 2006
Entrez Id: 4513
Gene Symbol: COX2
COX2
0.080 GeneticVariation disease BEFREE Association between COX-2 -1195G>A polymorphism and gastrointestinal cancer risk: A meta-analysis. 28405152 2017
Entrez Id: 4089
Gene Symbol: SMAD4
SMAD4
0.080 GeneticVariation disease BEFREE Although SMAD4 has been established as a tumor suppressor gene somatically mutated in pancreatic, gastrointestinal, and skin cancers, and germline loss-of-function lesions and deletions of this gene have been documented to cause disorders that predispose individuals to gastrointestinal cancer and vascular dysplasias, the present report identifies a previously unrecognized class of mutations in the gene with profound impact on development and growth. 22243968 2012
Entrez Id: 3845
Gene Symbol: KRAS
KRAS
0.080 GeneticVariation disease BEFREE Glycine to aspartic acid mutations at codon 13 of the c-Ki-ras gene in human gastrointestinal cancers. 2404571 1990
Entrez Id: 4089
Gene Symbol: SMAD4
SMAD4
0.080 GeneticVariation disease BEFREE The gastrointestinal cancer risk in patients with juvenile polyposis syndrome and a SMAD4 mutation was 11 per cent (3 of 27). 25389115 2015
Entrez Id: 3845
Gene Symbol: KRAS
KRAS
0.080 GeneticVariation disease BEFREE Nanofluidic digital PCR for KRAS mutation detection and quantification in gastrointestinal cancer. 22745110 2012
Entrez Id: 4089
Gene Symbol: SMAD4
SMAD4
0.080 GeneticVariation disease BEFREE The identification of SMAD4 mutations in HHT patients without prior diagnosis of JP has significant and immediate clinical implications, as these people are likely to be at risk of having JP-HHT with the associated increased risk of gastrointestinal cancer. 16613914 2006
Entrez Id: 107075310
Gene Symbol: MTCO2P12
MTCO2P12
0.080 GeneticVariation disease BEFREE Association between COX-2 -1195G>A polymorphism and gastrointestinal cancer risk: A meta-analysis. 28405152 2017
Entrez Id: 4089
Gene Symbol: SMAD4
SMAD4
0.080 GeneticVariation disease BEFREE Any JP patient with a SMAD4 mutation is, therefore, at risk for the visceral manifestations of HHT and any HHT patient with SMAD4 mutation is at risk for early onset gastrointestinal cancer. 20101697 2010
Entrez Id: 4089
Gene Symbol: SMAD4
SMAD4
0.080 GeneticVariation disease BEFREE Unlike the high incidences of Smad4 mutation or deletion in pancreatic cancer and gastrointestinal cancers, Smad4 gene is seldom mutated or deleted in hepatocellular carcinoma (HCC). 18949401 2008
Entrez Id: 3845
Gene Symbol: KRAS
KRAS
0.080 GeneticVariation disease BEFREE At the 2013 World Congress on Gastrointestinal Cancers, investigators have recently dealt with many clinically relevant questions, such as the preferred biologic drug to be used upfront in patients with KRAS wild-type colorectal tumors, the optimal treatment intensity, the most suitable maintenance strategy, the need for deeper molecular information when using EGFR inhibitors and the use of antiangiogenic drugs in the elderly. 24156327 2013
Entrez Id: 4089
Gene Symbol: SMAD4
SMAD4
0.080 GeneticVariation disease BEFREE Mutations in SMAD4 predispose to the development of gastrointestinal cancer, which is the third leading cause of cancer-related deaths. 27006499 2016
Entrez Id: 29126
Gene Symbol: CD274
CD274
0.070 GeneticVariation disease BEFREE The intratumoural immune cell subsets (CD4, CD8, Foxp3), the expression of immune checkpoints (PD-1, PD-L1), the defect in mismatch repair proteins and the mutation analysis of multiple clinically relevant genes in the gastrointestinal cancer setting were also determined. 29700411 2018
Entrez Id: 1806
Gene Symbol: DPYD
DPYD
0.060 GeneticVariation disease BEFREE Thymidylate synthase (TS), Dihydropyrimidine dehydrogenase (DPD) and Thymidine Phosphorylase (TP) gene expressions are reported to be predictive markers for 5-fluorouracil (5-FU) sensitivity in gastrointestinal cancer. 15890242 2005
Entrez Id: 4436
Gene Symbol: MSH2
MSH2
0.040 GeneticVariation disease BEFREE Ongoing studies at the Hereditary Gastrointestinal Cancer Registry in Hong Kong have revealed a unique germline MSH2 c.1452-1455delAATG mutation that has not been reported in other ethnic groups. 15042510 2004
Entrez Id: 1890
Gene Symbol: TYMP
TYMP
0.040 GeneticVariation disease BEFREE Thymidylate synthase (TS), Dihydropyrimidine dehydrogenase (DPD) and Thymidine Phosphorylase (TP) gene expressions are reported to be predictive markers for 5-fluorouracil (5-FU) sensitivity in gastrointestinal cancer. 15890242 2005
Entrez Id: 51196
Gene Symbol: PLCE1
PLCE1
0.040 GeneticVariation disease BEFREE PLC-ε1 gene polymorphisms significantly enhance the risk of esophageal squamous cell carcinoma in individuals with a family history of upper gastrointestinal cancers. 23079034 2012
Entrez Id: 51196
Gene Symbol: PLCE1
PLCE1
0.040 GeneticVariation disease BEFREE PLCE1 polymorphism and upper gastrointestinal cancer risk: a meta-analysis. 23826241 2013
Entrez Id: 51196
Gene Symbol: PLCE1
PLCE1
0.040 GeneticVariation disease BEFREE Genetic variation in C20orf54, PLCE1 and MUC1 and the risk of upper gastrointestinal cancers in Caucasian populations. 22805490 2012
Entrez Id: 3091
Gene Symbol: HIF1A
HIF1A
0.040 GeneticVariation disease BEFREE HIF-1α C1772T polymorphism and gastrointestinal tract cancer risk: a meta-analysis and meta-regression analysis. 24063654 2013
Entrez Id: 3091
Gene Symbol: HIF1A
HIF1A
0.040 GeneticVariation disease BEFREE However, no statistically significant associations were found between HIF-1α C1772T polymorphism and susceptibility to digestive cancer. 25158249 2014
Entrez Id: 3479
Gene Symbol: IGF1
IGF1
0.040 GeneticVariation disease BEFREE Here, the prevalence of the single nucleotide polymorphisms (SNPs) rs6214 in the IGF type I (IGF-I) gene and rs6898743 in the growth hormone receptor (GHR) gene in patients with GI cancer and controls was studied. 24608110 2014
Entrez Id: 9997
Gene Symbol: SCO2
SCO2
0.040 GeneticVariation disease BEFREE Thymidine phosphorylase gene variant, platelet counts and survival in gastrointestinal cancer patients treated by fluoropyrimidines. 25027354 2014