Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 987
Gene Symbol: LRBA
LRBA
0.010 Biomarker disease BEFREE Autosomal recessively inherited lipopolysaccharide-responsive beige-like anchor (LRBA) protein deficiency was shown to be responsible for different types of inborn errors of immunity, such as common variable immunodeficiency (CVID) and autoimmune lymphoproliferative syndrome (ALPS). 31432443 2019
Entrez Id: 5293
Gene Symbol: PIK3CD
PIK3CD
0.010 GeneticVariation disease BEFREE Viral infections, in particular EBV, HHV and HPV, have been shown to increase susceptibility to developing cancer, but also patients with defects in immune regulation, such as Autoimmune Lymphoproliferative Syndrome (ALPS), activated p110delta syndrome (APDS type 1) and IL-10 receptor deficiency among others have a higher incidence of neoplastic disease, particularly lymphomas. 31057537 2019
Entrez Id: 115650
Gene Symbol: TNFRSF13C
TNFRSF13C
0.010 GeneticVariation disease BEFREE We identified 6 patients with an ALPS (n = 2) or ALPS-like (n = 4) phenotype, carrying I406L (n = 1),V410l (n = 2),Y446C (n = 1) heterozygous CASP10 variants or the L522l polymorphisms (n = 2) associated with another polymorphic homozygote variant on CASP8 or a compound heterozygous mutation on TNFRSF13C. 31309545 2019
Entrez Id: 23583
Gene Symbol: SMUG1
SMUG1
0.010 GeneticVariation disease BEFREE We prospectively evaluated 76 ALPS/ALPS-like patients including FS-7-associated surface antigen (FAS) germline mutation with (n = 4) and without lymphoma (n = 50), FAS-somatic (n = 6), ALPS-unknown (n = 6), and others (n = 10) who underwent FDG PET. 31693620 2019
Entrez Id: 6777
Gene Symbol: STAT5B
STAT5B
0.010 Biomarker disease BEFREE Moreover, we identified a unique patient with a heterozygous missense mutation in the coiled-coil domain of STAT5B that presented with autoimmune lymphoproliferative syndrome-like features. 29187589 2018
Entrez Id: 51816
Gene Symbol: ADA2
ADA2
0.010 Biomarker disease BEFREE Deficiency of ADA2 mimicking autoimmune lymphoproliferative syndrome in the absence of livedo reticularis and vasculitis. 29271561 2018
Entrez Id: 6932
Gene Symbol: TCF7
TCF7
0.010 Biomarker disease BEFREE With these examinations, we revealed that TCF1 deficiency relieved most manifestations of ALPS-like phenotype, which were caused by Fas mutation in TCF1<sup>-/-</sup> lpr/lpr mice. 28349581 2017
Entrez Id: 6927
Gene Symbol: HNF1A
HNF1A
0.010 Biomarker disease BEFREE With these examinations, we revealed that TCF1 deficiency relieved most manifestations of ALPS-like phenotype, which were caused by Fas mutation in TCF1<sup>-/-</sup> lpr/lpr mice. 28349581 2017
Entrez Id: 2475
Gene Symbol: MTOR
MTOR
0.010 Biomarker disease BEFREE Mammalian target of rapamycin (mTOR) inhibitors have been proven useful in autoimmune lymphoproliferative syndrome (ALPS) and in IPEX syndrome. 27873163 2017
Entrez Id: 406991
Gene Symbol: MIR21
MIR21
0.010 Biomarker disease BEFREE As only the son had the major clinical manifestations of ALPS-FAS, miR-21-3p should be investigated as playing a critical role in ALPS physiopathology, including the development of lymphoma. 27060458 2016
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.010 Biomarker disease BEFREE We used flow cytometry to analyze the expression of pro- and anti-apoptotic Bcl-2 family members in T cells from 12 ALPS patients and determined the in vitro sensitivity of ALPS DNTC to the pro-apoptotic BH3 mimetic, ABT-737. 25174872 2015
Entrez Id: 842
Gene Symbol: CASP9
CASP9
0.010 Biomarker disease BEFREE Thus, cytotoxic T lymphocyte-associated antigen 4 or caspase-9 deficiency presenting with CVID-like phenotypes reiterate concepts of immune dysregulation, polyendocrinopathy, enteropathy, X-linked syndrome and autoimmune lymphoproliferative syndrome. 26485099 2015
Entrez Id: 939
Gene Symbol: CD27
CD27
0.010 Biomarker disease BEFREE Here we show that human ALPS DNT have features of terminally differentiated effector memory T cells reexpressing CD45RA(+) (TEMRA), but are CD27(+)CD28(+)KLRG1(-) and do not express the transcription factor T-bet. 24894771 2014
Entrez Id: 10219
Gene Symbol: KLRG1
KLRG1
0.010 Biomarker disease BEFREE Here we show that human ALPS DNT have features of terminally differentiated effector memory T cells reexpressing CD45RA(+) (TEMRA), but are CD27(+)CD28(+)KLRG1(-) and do not express the transcription factor T-bet. 24894771 2014
Entrez Id: 3161
Gene Symbol: HMMR
HMMR
0.010 Biomarker disease BEFREE Further study indicated that most of the genes in the coexpression network were enriched in ECM-receptor interaction (COL4A2, FN1, and HMMR) and nucleotide excision repair (CETN2 and PCNA) pathways, and that the most significantly related disease was autoimmune lymphoproliferative syndromes. 25299107 2014
Entrez Id: 940
Gene Symbol: CD28
CD28
0.010 Biomarker disease BEFREE Here we show that human ALPS DNT have features of terminally differentiated effector memory T cells reexpressing CD45RA(+) (TEMRA), but are CD27(+)CD28(+)KLRG1(-) and do not express the transcription factor T-bet. 24894771 2014
Entrez Id: 1284
Gene Symbol: COL4A2
COL4A2
0.010 Biomarker disease BEFREE Further study indicated that most of the genes in the coexpression network were enriched in ECM-receptor interaction (COL4A2, FN1, and HMMR) and nucleotide excision repair (CETN2 and PCNA) pathways, and that the most significantly related disease was autoimmune lymphoproliferative syndromes. 25299107 2014
Entrez Id: 1069
Gene Symbol: CETN2
CETN2
0.010 Biomarker disease BEFREE Further study indicated that most of the genes in the coexpression network were enriched in ECM-receptor interaction (COL4A2, FN1, and HMMR) and nucleotide excision repair (CETN2 and PCNA) pathways, and that the most significantly related disease was autoimmune lymphoproliferative syndromes. 25299107 2014
Entrez Id: 22915
Gene Symbol: MMRN1
MMRN1
0.010 Biomarker disease BEFREE Further study indicated that most of the genes in the coexpression network were enriched in ECM-receptor interaction (COL4A2, FN1, and HMMR) and nucleotide excision repair (CETN2 and PCNA) pathways, and that the most significantly related disease was autoimmune lymphoproliferative syndromes. 25299107 2014
Entrez Id: 5111
Gene Symbol: PCNA
PCNA
0.010 Biomarker disease BEFREE Further study indicated that most of the genes in the coexpression network were enriched in ECM-receptor interaction (COL4A2, FN1, and HMMR) and nucleotide excision repair (CETN2 and PCNA) pathways, and that the most significantly related disease was autoimmune lymphoproliferative syndromes. 25299107 2014
Entrez Id: 112744
Gene Symbol: IL17F
IL17F
0.010 Biomarker disease BEFREE These data suggest that IL-17A and IL-17F could be targeted therapeutically to improve Fas function in ALPS and DALD. 24363402 2014
Entrez Id: 331
Gene Symbol: XIAP
XIAP
0.010 GeneticVariation disease BEFREE Intriguingly, the patient carried mutations in FAS, XIAP, and UNC13D genes, which are involved in ALPS, XLP disease, and FHL, respectively. 24043286 2013
Entrez Id: 406938
Gene Symbol: MIR146A
MIR146A
0.010 Biomarker disease BEFREE These results indicate that miR-146a may be involved in the pathogenesis of ALPS by targeting Fas and may therefore serve as a novel therapeutic target. 23645835 2013
Entrez Id: 4068
Gene Symbol: SH2D1A
SH2D1A
0.010 AlteredExpression disease BEFREE These data suggest that -346T is a predisposing factor for ALPS and DALD in males possibly because of its effect on SAP expression influencing the T-cell response. 22425739 2012
Entrez Id: 325
Gene Symbol: APCS
APCS
0.010 AlteredExpression disease BEFREE These data suggest that -346T is a predisposing factor for ALPS and DALD in males possibly because of its effect on SAP expression influencing the T-cell response. 22425739 2012