Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.010 GeneticVariation phenotype BEFREE Accordingly, there is a very high frequency of TP53 mutations in AML/MDS arising in the setting of SDS but not SCN. 30431463 2019
Entrez Id: 6323
Gene Symbol: SCN1A
SCN1A
0.010 GeneticVariation phenotype BEFREE Severe congenital neutropenia 1 (SCN1) caused by ELANE mutations is a rare disease characterized by very low numbers of circulating neutrophils. 31176364 2019
Entrez Id: 3815
Gene Symbol: KIT
KIT
0.010 Biomarker phenotype BEFREE More importantly, our finding shows that E6AP also targets mutant form of G-SCFR (G-CSFR-T718), frequently observed in severe congenital neutropenia (SCN) patients that very often culminate to AML, however, at a quite slower rate than wild type G-CSFR. 28578910 2017
Entrez Id: 7994
Gene Symbol: KAT6A
KAT6A
0.010 GeneticVariation phenotype BEFREE Unlike KAT6A, which seems to be associated with a syndromic form of CN, the other reported mutations may not explain the entire clinical picture. 27615324 2017
Entrez Id: 10075
Gene Symbol: HUWE1
HUWE1
0.010 GeneticVariation phenotype BEFREE Three sub-groups of patients were highlighted: (i) severe, symptomatic chronic neutropenia, detected early in life, and related to a known mutation in the CN spectrum (ELANE); (ii) mild to moderate benign intermittent neutropenia, detected later, and associated with mutations in genes implicated in neurodevelopmental disorders (CHD2, HUWE1); and (iii) moderate to severe intermittent neutropenia as a probably undiagnosed feature of a newly reported syndrome (KAT6A). 27615324 2017
Entrez Id: 1106
Gene Symbol: CHD2
CHD2
0.010 GeneticVariation phenotype BEFREE Three sub-groups of patients were highlighted: (i) severe, symptomatic chronic neutropenia, detected early in life, and related to a known mutation in the CN spectrum (ELANE); (ii) mild to moderate benign intermittent neutropenia, detected later, and associated with mutations in genes implicated in neurodevelopmental disorders (CHD2, HUWE1); and (iii) moderate to severe intermittent neutropenia as a probably undiagnosed feature of a newly reported syndrome (KAT6A). 27615324 2017
Entrez Id: 3218
Gene Symbol: HOXB8
HOXB8
0.010 GeneticVariation phenotype BEFREE NE-deficient Hoxb8 progenitors were reconstituted with murine and human forms of typical NE mutants representative of SCN and cyclic neutropenia, and differentiation of the cells was analysed in vitro and in vivo. 27942017 2016
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.010 Biomarker phenotype BEFREE Similarly, high-dose G-CSF (or downstream signaling through AKT/BCL2) rescues the dysgranulopoietic defect in SCN patient-derived iPSCs through C/EBPβ-dependent emergency granulopoiesis. 26193632 2015
Entrez Id: 488
Gene Symbol: ATP2A2
ATP2A2
0.010 Biomarker phenotype BEFREE Additionally, we show that CLPB interacts biochemically with ATP2A2, known to be involved in apoptotic processes in severe congenital neutropenia (SCN) 3 (Kostmann disease [caused by HAX1 mutations]). 25597510 2015
Entrez Id: 81570
Gene Symbol: CLPB
CLPB
0.010 Biomarker phenotype BEFREE Additionally, we show that CLPB interacts biochemically with ATP2A2, known to be involved in apoptotic processes in severe congenital neutropenia (SCN) 3 (Kostmann disease [caused by HAX1 mutations]). 25597510 2015
Entrez Id: 1051
Gene Symbol: CEBPB
CEBPB
0.010 Biomarker phenotype BEFREE Similarly, high-dose G-CSF (or downstream signaling through AKT/BCL2) rescues the dysgranulopoietic defect in SCN patient-derived iPSCs through C/EBPβ-dependent emergency granulopoiesis. 26193632 2015
Entrez Id: 157680
Gene Symbol: VPS13B
VPS13B
0.010 Biomarker phenotype BEFREE This observation emphasizes that VPS13B analysis should be performed in cases of congenital neutropenia associated with retinopathy, even in the absence of ID, therefore extending the VPS13B phenotype spectrum. 24311531 2014
Entrez Id: 3579
Gene Symbol: CXCR2
CXCR2
0.010 GeneticVariation phenotype BEFREE In a separate family-based resequencing study, we identified a CXCR2 frameshift mutation in a pedigree with congenital neutropenia that abolished ligand-induced CXCR2 signal transduction and chemotaxis. 24777453 2014
Entrez Id: 6590
Gene Symbol: SLPI
SLPI
0.010 Biomarker phenotype BEFREE We identified diminished levels of the natural inhibitor of neutrophil elastase (NE), secretory leukocyte protease inhibitor (SLPI), in myeloid cells and plasma of patients with severe congenital neutropenia (CN). 24352879 2014
Entrez Id: 89780
Gene Symbol: WNT3A
WNT3A
0.010 AlteredExpression phenotype BEFREE These results indicate that SCN-iPS cells provide a useful disease model for SCN, and the activation of the Wnt3a/β-catenin pathway may offer a novel therapy for SCN with ELANE mutation. 23382209 2013
Entrez Id: 1666
Gene Symbol: DECR1
DECR1
0.010 GeneticVariation phenotype BEFREE Inborn errors of the phagocyte NADPH oxidase complex (chronic granulomatous disease), severe congenital neutropenia (SCN) and leukocyte adhesion deficiency type I confer a predisposition to invasive aspergillosis and candidiasis. 24240293 2013
Entrez Id: 1499
Gene Symbol: CTNNB1
CTNNB1
0.010 AlteredExpression phenotype BEFREE These results indicate that SCN-iPS cells provide a useful disease model for SCN, and the activation of the Wnt3a/β-catenin pathway may offer a novel therapy for SCN with ELANE mutation. 23382209 2013
Entrez Id: 2542
Gene Symbol: SLC37A4
SLC37A4
0.010 GeneticVariation phenotype BEFREE Syndromic variants of congenital neutropenia may be due to mutations in genes controlling glucose metabolism (SLC37A4, G6PC3) or lysosomal function (LYST, RAB27A, ROBLD3/p14, AP3B1, VPS13B). 20008220 2009
Entrez Id: 3934
Gene Symbol: LCN2
LCN2
0.010 AlteredExpression phenotype BEFREE The contents of both cathelicidin antimicrobial peptide and neutrophil gelatinase-associated lipocalin were significantly reduced in SCN compared with healthy controls. 19415009 2009
Entrez Id: 10135
Gene Symbol: NAMPT
NAMPT
0.010 Biomarker phenotype BEFREE Recently, we identified nicotinamide phosphoribosyltransferase (NAMPT), also known as pre-B cell colony enhancing factor (PBEF), as an essential enzyme mediating granulocyte colony-stimulating factor (G-CSF)-triggered granulopoiesis in healthy individuals and in individuals with CN. 19796237 2009
Entrez Id: 959
Gene Symbol: CD40LG
CD40LG
0.010 GeneticVariation phenotype BEFREE Severe congenital neutropenia or hyper-IgM syndrome? A novel mutation of CD40 ligand in a patient with severe neutropenia. 18594157 2008
Entrez Id: 4057
Gene Symbol: LTF
LTF
0.010 GeneticVariation phenotype BEFREE No differences in expressions of the lactoferrin gene were seen between normal subjects and patients with SCN. 12554799 2003
Entrez Id: 945
Gene Symbol: CD33
CD33
0.010 Biomarker phenotype BEFREE Bone marrow-derived primitive CD34(+) and CD33(+)/CD34(-) progenitor cells from SCN patients evolving to AML, all with mutations in the granulocyte colony-stimulating factor receptor (G-CSFR) gene, demonstrated normal cell survival, whereas more differentiated CD15(+)/CD33(-)/CD34(-) cells negative for mutant G-CSFR gene, continue to exhibit accelerated apoptosis. 12763135 2003
Entrez Id: 861
Gene Symbol: RUNX1
RUNX1
0.010 GeneticVariation phenotype BEFREE This report describes a 4-y-old female with a history of severe congenital neutropenia, who developed a clonal abnormality associated with the translocation (7;21;8) (q32;q22;q22) (AML-1/ETO). 12477275 2002
Entrez Id: 862
Gene Symbol: RUNX1T1
RUNX1T1
0.010 GeneticVariation phenotype BEFREE This report describes a 4-y-old female with a history of severe congenital neutropenia, who developed a clonal abnormality associated with the translocation (7;21;8) (q32;q22;q22) (AML-1/ETO). 12477275 2002