Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7399
Gene Symbol: USH2A
USH2A
0.010 GeneticVariation disease BEFREE In MFM vs. control at rest, 284 genes were DE with >1 log<sub>2</sub> FC in pathways for structure morphogenesis, fiber organization, tissue development, and cell differentiation including > 1 log<sub>2</sub> FC in cardiac alpha actin ( ACTC1 ↑2.5 MFM), cytoskeletal desmoplakin ( DSP ↑2.4 MFM), and basement membrane usherin ( USH2A ↓2.9 MFM). 30289745 2018
Entrez Id: 7169
Gene Symbol: TPM2
TPM2
0.010 Biomarker disease BEFREE Proteome analysis revealed significantly lower antioxidant peroxiredoxin 6 content (PRDX6, ↓4.14 log<sub>2</sub> FC MFM), higher fatty acid transport enzyme carnitine palmitoyl transferase (CPT1B, ↑3.49 MFM), and lower sarcomere protein tropomyosin (TPM2, ↓3.24 MFM) in MFM vs. control muscle at rest. 30289745 2018
Entrez Id: 56301
Gene Symbol: SLC7A10
SLC7A10
0.010 Biomarker disease BEFREE Three hours after exercise, 191 genes were identified as differentially expressed (DE) in MFM vs. control muscle with >1 log<sub>2</sub> fold change (FC) in genes involved in sulfur compound/cysteine metabolism such as cystathionine-beta-synthase ( CBS, ↓4.51), a cysteine and neutral amino acid membrane transporter ( SLC7A10, ↓1.80 MFM), and a cationic transporter (SLC24A1, ↓1.11 MFM). 30289745 2018
Entrez Id: 70
Gene Symbol: ACTC1
ACTC1
0.010 GeneticVariation disease BEFREE In MFM vs. control at rest, 284 genes were DE with >1 log<sub>2</sub> FC in pathways for structure morphogenesis, fiber organization, tissue development, and cell differentiation including > 1 log<sub>2</sub> FC in cardiac alpha actin ( ACTC1 ↑2.5 MFM), cytoskeletal desmoplakin ( DSP ↑2.4 MFM), and basement membrane usherin ( USH2A ↓2.9 MFM). 30289745 2018
Entrez Id: 875
Gene Symbol: CBS
CBS
0.010 Biomarker disease BEFREE Three hours after exercise, 191 genes were identified as differentially expressed (DE) in MFM vs. control muscle with >1 log<sub>2</sub> fold change (FC) in genes involved in sulfur compound/cysteine metabolism such as cystathionine-beta-synthase ( CBS, ↓4.51), a cysteine and neutral amino acid membrane transporter ( SLC7A10, ↓1.80 MFM), and a cationic transporter (SLC24A1, ↓1.11 MFM). 30289745 2018
Entrez Id: 9187
Gene Symbol: SLC24A1
SLC24A1
0.010 Biomarker disease BEFREE Three hours after exercise, 191 genes were identified as differentially expressed (DE) in MFM vs. control muscle with >1 log<sub>2</sub> fold change (FC) in genes involved in sulfur compound/cysteine metabolism such as cystathionine-beta-synthase ( CBS, ↓4.51), a cysteine and neutral amino acid membrane transporter ( SLC7A10, ↓1.80 MFM), and a cationic transporter (SLC24A1, ↓1.11 MFM). 30289745 2018
Entrez Id: 9588
Gene Symbol: PRDX6
PRDX6
0.010 Biomarker disease BEFREE Proteome analysis revealed significantly lower antioxidant peroxiredoxin 6 content (PRDX6, ↓4.14 log<sub>2</sub> FC MFM), higher fatty acid transport enzyme carnitine palmitoyl transferase (CPT1B, ↑3.49 MFM), and lower sarcomere protein tropomyosin (TPM2, ↓3.24 MFM) in MFM vs. control muscle at rest. 30289745 2018
Entrez Id: 102724560
Gene Symbol: CBSL
CBSL
0.010 Biomarker disease BEFREE Three hours after exercise, 191 genes were identified as differentially expressed (DE) in MFM vs. control muscle with >1 log<sub>2</sub> fold change (FC) in genes involved in sulfur compound/cysteine metabolism such as cystathionine-beta-synthase ( CBS, ↓4.51), a cysteine and neutral amino acid membrane transporter ( SLC7A10, ↓1.80 MFM), and a cationic transporter (SLC24A1, ↓1.11 MFM). 30289745 2018
Entrez Id: 1375
Gene Symbol: CPT1B
CPT1B
0.010 Biomarker disease BEFREE Proteome analysis revealed significantly lower antioxidant peroxiredoxin 6 content (PRDX6, ↓4.14 log<sub>2</sub> FC MFM), higher fatty acid transport enzyme carnitine palmitoyl transferase (CPT1B, ↑3.49 MFM), and lower sarcomere protein tropomyosin (TPM2, ↓3.24 MFM) in MFM vs. control muscle at rest. 30289745 2018
Entrez Id: 825
Gene Symbol: CAPN3
CAPN3
0.010 GeneticVariation disease BEFREE In this study, we observed increased passive tension (PT) of skinned myofibers from patients with myofibrillar myopathy (MFM) caused by FLNC mutations (MFM-filaminopathy) and limb-girdle muscular dystrophy type-2A due to CAPN3 mutations (LGMD2A), compared to healthy control myofibers. 28915917 2017
Entrez Id: 4892
Gene Symbol: NRAP
NRAP
0.010 GeneticVariation disease BEFREE To our knowledge this is the first study reporting, in a BAG3 MFM, the simultaneous presence of genetic variants in the BAG3 and FHL1 genes (previously described as independently associated with MFMs) and linking the NRAP gene to MFM for the first time. 27443559 2016
Entrez Id: 4625
Gene Symbol: MYH7
MYH7
0.010 GeneticVariation disease BEFREE One patient presented with facioscapulohumeral muscular dystrophy and one patient with an MYH7 gene-related myofibrillar myopathy. 26969127 2016
Entrez Id: 2335
Gene Symbol: FN1
FN1
0.010 GeneticVariation disease BEFREE We sequenced the exon 343 of TTN gene (based on ENST00000589042), which encodes the fibronectin-3 (FN3) 119 domain of the A-band and is a mutational hot spot for HMERF, in genomic DNA from 187 patients from 175 unrelated families who were pathologically diagnosed as MFM. 25253871 2015
Entrez Id: 55636
Gene Symbol: CHD7
CHD7
0.010 GeneticVariation disease BEFREE Less common myopathies included metabolic myopathy (2 families), congenital myasthenic syndrome (DOK7), congenital myopathy (ACTA1), tubular aggregate myopathy (STIM1), myofibrillar myopathy (FLNC), and mutation of CHD7, usually associated with the CHARGE syndrome. 26436962 2015
Entrez Id: 1351
Gene Symbol: COX8A
COX8A
0.010 Biomarker disease BEFREE However, the percentage of COX-deficient fibers was significantly higher in 3 MFM patients. 24361111 2014
Entrez Id: 9377
Gene Symbol: COX5A
COX5A
0.010 Biomarker disease BEFREE However, the percentage of COX-deficient fibers was significantly higher in 3 MFM patients. 24361111 2014
Entrez Id: 1431
Gene Symbol: CS
CS
0.010 Biomarker disease BEFREE Citrate synthase activities in MFM patients were 1.5-fold increased by compared to those in controls, suggesting initiation of mitochondrial alterations. 24361111 2014
Entrez Id: 1371
Gene Symbol: CPOX
CPOX
0.010 Biomarker disease BEFREE However, the percentage of COX-deficient fibers was significantly higher in 3 MFM patients. 24361111 2014
Entrez Id: 165904
Gene Symbol: XIRP1
XIRP1
0.010 GeneticVariation disease BEFREE Dependent on the MFM causing mutation, different sets of proteins were revealed as genuine (accumulated) plaque components in independent technical replicates: (i) αB-crystallin, desmin, filamin A/C, myotilin, PRAF3, RTN2, SQSTM, XIRP1, and XIRP2 (patient with defined MFM mutation distinct from FHL1) or (ii) desmin, FHL1, filamin A/C, KBTBD10, NRAP, SQSTM, RL40, XIRP1, and XIRP2 (patient with FHL1 mutation). 23044792 2012
Entrez Id: 129446
Gene Symbol: XIRP2
XIRP2
0.010 GeneticVariation disease BEFREE Dependent on the MFM causing mutation, different sets of proteins were revealed as genuine (accumulated) plaque components in independent technical replicates: (i) αB-crystallin, desmin, filamin A/C, myotilin, PRAF3, RTN2, SQSTM, XIRP1, and XIRP2 (patient with defined MFM mutation distinct from FHL1) or (ii) desmin, FHL1, filamin A/C, KBTBD10, NRAP, SQSTM, RL40, XIRP1, and XIRP2 (patient with FHL1 mutation). 23044792 2012
Entrez Id: 203859
Gene Symbol: ANO5
ANO5
0.010 Biomarker disease BEFREE Muscle MRI therefore does not appear to be as useful in the diagnostic work up of LGMD2L as for other neuromuscular diseases, such as Bethlem myopathy or myofibrillar myopathy. 22980763 2012
Entrez Id: 9897
Gene Symbol: WASHC5
WASHC5
0.010 Biomarker disease BEFREE We further identified strumpellin in pathological protein aggregates in inclusion body myopathy associated with Paget disease of bone and frontotemporal dementia, various myofibrillar myopathies and in cortical neurons of a Huntington's disease mouse model. 20833645 2010
Entrez Id: 7345
Gene Symbol: UCHL1
UCHL1
0.010 AlteredExpression disease BEFREE UCHL1 is a 24.8 kDa member of proteosome proteins; it is over-expressed in myofibrillar myopathy and is associated with neurodegenerative diseases. 19204867 2009
Entrez Id: 3145
Gene Symbol: HMBS
HMBS
0.010 Biomarker disease BEFREE As oxidized proteins are vulnerable to misfolding and are resistant to degradation by the UPS, the present observations support a link between oxidative stress, protein aggregation and abnormal protein deposition in MFMs. 17784878 2007
Entrez Id: 4000
Gene Symbol: LMNA
LMNA
0.010 GeneticVariation disease BEFREE Major myofibrillar changes in early onset myopathy due to de novo heterozygous missense mutation in lamin A/C gene. 16288872 2005