Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs2230926
rs2230926
0.030 GeneticVariation BEFREE The rs2230926 exonic variant was associated with an increased risk for pSS complicated by lymphoma (odds ratio, 3.36 [95% confidence interval, 1.34-8.42], and odds ratio, 3.26 [95% confidence interval, 1.31-8.12], vs controls and pSS patients without lymphoma, respectively; P = .011). 24159176

2013

dbSNP: rs2230926
rs2230926
0.030 GeneticVariation BEFREE TNFAIP3 F127C Coding Variation in Greek Primary Sjogren's Syndrome Patients. 30662920

2018

dbSNP: rs2230926
rs2230926
0.030 GeneticVariation BEFREE In both cohorts, the rs2230926 missense polymorphism was not associated with pSS. 26338037

2016

dbSNP: rs7574865
rs7574865
0.030 GeneticVariation BEFREE To examine the influence of STAT4 rs7574865 gene polymorphism on patients with primary Sjögren's syndrome (SS). 20360187

2010

dbSNP: rs7574865
rs7574865
0.030 GeneticVariation BEFREE Our meta-analysis revealed that the STAT4 rs7574865 polymorphism is associated with four autoimmune diseases with systemic pathology, including systemic lupus erythematosus (OR = 1.52; 95% CI = 1.48 - 1.56, P<1.0 × 10(-16)), rheumatoid arthritis (OR = 1.27; 95% CI = 1.21 - 1.33, P < 1.00 × 10(-16)), systemic sclerosis (OR = 1.38; 95% CI = 1.27 - 1.50, P < 1.44 × 10(-14)), and primary Sjogren's syndrome (OR = 1.32; 95% CI = 1.01 - 1.73, P = 4.40 × 10(-2)), while no association was found with type I diabetes, juvenile idiopathic arthritis, ulcerative colitis and Crohn's disease. 23628400

2013

dbSNP: rs7574865
rs7574865
0.030 GeneticVariation BEFREE The overall odds ratios for rs7574865 T-allele significantly increased in SLE, RA, T1D, SSc, JIA, and APS (OR = 1.56, 1.25, 1.13, 1.34, 1.25, and 2.15, respectively, P < 0.00001) and in IBD-UC and pSS (OR = 1.11 and 1.33, respectively, P < 0.05). 22714917

2012

dbSNP: rs117026326
rs117026326
0.020 GeneticVariation BEFREE The combined analysis identified GTF2I at 7q11.23 (rs117026326: Pcombined = 1.31 × 10(-53), combined odds ratio (ORcombined) = 2.20) as a new susceptibility locus for primary Sjögren's syndrome. 24097066

2013

dbSNP: rs117026326
rs117026326
0.020 GeneticVariation BEFREE Genetic variant rs117026326 upstream of the general transcription factor II-I (GTF2I) has been associated with primary Sjögren's syndrome, SLE and RA in East Asian populations. 31520790

2019

dbSNP: rs2736340
rs2736340
0.020 GeneticVariation BEFREE Our results indicated that the SNPs (rs2736340, rs13277113) of the FAM167A-BLK region, but not the BANK1 SNPs (rs4522865, rs17266594, and rs10516487), were associated with the development of pSS in Han Chinese. 23899688

2013

dbSNP: rs2736340
rs2736340
0.020 GeneticVariation BEFREE Stratification analysis by diseases suggested FAM167A-BLK rs2736340 had a positive association with rheumatoid arthritis (RA), systemic lupus erythematosus (SLE), systemic sclerosis (SSc) and Kawasaki disease, primary Sjogren's syndrome (pSS), primary antiphosholipid syndrome (APS), and myositis. 27105348

2016

dbSNP: rs10516487
rs10516487
0.010 GeneticVariation BEFREE Our results indicated that the SNPs (rs2736340, rs13277113) of the FAM167A-BLK region, but not the BANK1 SNPs (rs4522865, rs17266594, and rs10516487), were associated with the development of pSS in Han Chinese. 23899688

2013

dbSNP: rs10817595
rs10817595
0.010 GeneticVariation BEFREE <i>HIF1A</i> (rs11549465) and <i>AKNA</i> (rs10817595) Gene Polymorphisms Are Associated with Primary Sjögren's Syndrome. 28484714

2017

dbSNP: rs10840759
rs10840759
0.010 GeneticVariation BEFREE There is no association between rs10840759 and SLE or primary SS. 26429306

2015

dbSNP: rs1143679
rs1143679
0.010 GeneticVariation BEFREE We evaluated case-control association between rs1143679 and ADs (N=18,457) including primary Sjögren's syndrome, systemic sclerosis, multiple sclerosis, rheumatoid arthritis, juvenile idiopathic arthritis, celiac disease, and type-1 diabetes. 21840425

2012

dbSNP: rs11549465
rs11549465
0.010 GeneticVariation BEFREE We identified <i>HIF1A Pro582Ser T</i> allele and <i>C</i>/<i>T</i> genotype as well as <i>AKNA -1372C>A</i> polymorphism A/A genotype as genetic factors associated with pSS. 28484714

2017

dbSNP: rs11575837
rs11575837
0.010 GeneticVariation BEFREE We performed a case-control study of genetic polymorphisms of the NCR3/NKp30 gene and found that rs11575837 (G>A) residing in the promoter was associated with reduced gene transcription and function as well as protection to pSS. 23884468

2013

dbSNP: rs1217691063
rs1217691063
0.010 GeneticVariation BEFREE Αnalysis according to lymphoma subtype revealed increased frequency of c. 677C > T TT genotype and T allele, as well as reduced prevalence of the c. 1298A > C C allele in the pSS non-MALT group compared to controls and patients without NHL. 28779180

2017

dbSNP: rs1234313
rs1234313
0.010 GeneticVariation BEFREE In TNFSF4, T allele and TT genotype of rs2205960, and G allele of rs1234313, were associated with pSS (p<0.05); T allele of rs2205960 was correlated with PBC (p<0.05) as a risk factor. 23622253

2013

dbSNP: rs12583006
rs12583006
0.010 GeneticVariation BEFREE The low risk pSS group exhibited higher frequency of the minor A allele and AA genotype of the rs12583006 variant compared to HC. 23845207

2014

dbSNP: rs13277113
rs13277113
BLK
0.010 GeneticVariation BEFREE Our results indicated that the SNPs (rs2736340, rs13277113) of the FAM167A-BLK region, but not the BANK1 SNPs (rs4522865, rs17266594, and rs10516487), were associated with the development of pSS in Han Chinese. 23899688

2013

dbSNP: rs13447
rs13447
0.010 GeneticVariation BEFREE We show that the p.Arg90His substitution, which is reported to cause reduced reactive oxygen species (ROS) production, predisposes to SLE (odds ratio (OR) = 3.47 in Asians (P<sub>meta</sub> = 3.1 × 10<sup>-104</sup>), OR = 2.61 in European Americans, OR = 2.02 in African Americans) and other autoimmune diseases, including primary Sjögren's syndrome (OR = 2.45 in Chinese, OR = 2.35 in European Americans) and rheumatoid arthritis (OR = 1.65 in Koreans). 28135245

2017

dbSNP: rs1376314937
rs1376314937
0.010 GeneticVariation BEFREE We identified <i>HIF1A Pro582Ser T</i> allele and <i>C</i>/<i>T</i> genotype as well as <i>AKNA -1372C>A</i> polymorphism A/A genotype as genetic factors associated with pSS. 28484714

2017

dbSNP: rs17266594
rs17266594
0.010 GeneticVariation BEFREE Our results indicated that the SNPs (rs2736340, rs13277113) of the FAM167A-BLK region, but not the BANK1 SNPs (rs4522865, rs17266594, and rs10516487), were associated with the development of pSS in Han Chinese. 23899688

2013

dbSNP: rs2004640
rs2004640
0.010 GeneticVariation BEFREE This study is the first to demonstrate a significant association between primary SS and the IRF5 rs2004640 T allele. 18050197

2007

dbSNP: rs201802880
rs201802880
0.010 GeneticVariation BEFREE We show that the p.Arg90His substitution, which is reported to cause reduced reactive oxygen species (ROS) production, predisposes to SLE (odds ratio (OR) = 3.47 in Asians (P<sub>meta</sub> = 3.1 × 10<sup>-104</sup>), OR = 2.61 in European Americans, OR = 2.02 in African Americans) and other autoimmune diseases, including primary Sjögren's syndrome (OR = 2.45 in Chinese, OR = 2.35 in European Americans) and rheumatoid arthritis (OR = 1.65 in Koreans). 28135245

2017