Source: ALL
Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs6894249
rs6894249
IRF1-AS1
0.700 GeneticVariation GWASCAT Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis. 23603761

2013
dbSNP: rs73300638
rs73300638
JAZF1
C 0.700 GeneticVariation GWASCAT Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis. 23603761

2013
dbSNP: rs114940806
rs114940806
KLF17
0.700 GeneticVariation GWASCAT Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications. 27927641

2017
dbSNP: rs3764147
rs3764147
LACC1
0.010 GeneticVariation BEFREE Single-nucleotide variations in C13orf31 (LACC1) that encode p.C284R and p.I254V in a protein of unknown function (called 'FAMIN' here) are associated with increased risk for systemic juvenile idiopathic arthritis, leprosy and Crohn's disease. 27478939

2016
dbSNP: rs730880295
rs730880295
LACC1
0.010 GeneticVariation BEFREE Single-nucleotide variations in C13orf31 (LACC1) that encode p.C284R and p.I254V in a protein of unknown function (called 'FAMIN' here) are associated with increased risk for systemic juvenile idiopathic arthritis, leprosy and Crohn's disease. 27478939

2016
dbSNP: rs10194635
rs10194635
LINC01104
T 0.700 GeneticVariation GWASCAT Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis. 23603761

2013
dbSNP: rs12712122
rs12712122
LINC01127
0.010 GeneticVariation BEFREE Meta-analysis of the genotypes from both stages showed that three IL1 ligand cluster SNPs (rs6712572, rs2071374 and rs1688075) and one IL1 receptor cluster SNP (rs12712122) show evidence of significant association with sJIA. 18418395

2008
dbSNP: rs12517545
rs12517545
LINC01331
0.700 GeneticVariation GWASCAT Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications. 27927641

2017
dbSNP: rs34132030
rs34132030
LINC02341
A 0.700 GeneticVariation GWASCAT Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis. 23603761

2013
dbSNP: rs27293
rs27293
LNPEP
A 0.700 GeneticVariation GWASCAT Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis. 23603761

2013
dbSNP: rs10849448
rs10849448
LTBR
A 0.700 GeneticVariation GWASCAT Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis. 23603761

2013
dbSNP: rs104895179
rs104895179
MEFV
0.010 GeneticVariation BEFREE In this line, we describe a 9-year-old girl affected with SJIA who carried a heterozygous G196W mutation in MEFV. 20044784

2012
dbSNP: rs28940579
rs28940579
MEFV
0.010 GeneticVariation BEFREE V726A was the leading mutation in SoJIA patients, with an allelic frequency of 15.74 %, followed by E148Q, with an allelic frequency of 7.4 %. 24862656

2014
dbSNP: rs61752717
rs61752717
MEFV
0.010 GeneticVariation BEFREE Among these, M694V was the leading mutation with a frequency of 10% in SoJIA. 18984609

2009
dbSNP: rs6679677
rs6679677
PHTF1
A 0.700 GeneticVariation GWASCAT Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis. 23603761

2013
dbSNP: rs35947132
rs35947132
PRF1
0.010 GeneticVariation BEFREE Interestingly, the prevalence of Ala91Val in SoJIA patients with a history of MAS (20%) was increased compared with SoJIA patients without MAS (9.8%). 20019066

2010
dbSNP: rs864089
rs864089
PRICKLE2
0.700 GeneticVariation GWASCAT Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications. 27927641

2017
dbSNP: rs7127214
rs7127214
PRR5L
0.700 GeneticVariation GWASCAT Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis. 23603761

2013
dbSNP: rs149850873
rs149850873
PTPN2
0.700 GeneticVariation GWASCAT Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis. 23603761

2013
dbSNP: rs11074967
rs11074967
RMI2 ; LOC400499 ; LOC105371082
0.700 GeneticVariation GWASCAT Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis. 23603761

2013
dbSNP: rs8129030
rs8129030
RUNX1
0.700 GeneticVariation GWASCAT Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis. 23603761

2013
dbSNP: rs45539732
rs45539732
STAT1
0.700 GeneticVariation GWASCAT Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis. 23603761

2013
dbSNP: rs10174238
rs10174238
STAT4
G 0.700 GeneticVariation GWASCAT Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis. 23603761

2013
dbSNP: rs11714843
rs11714843
TIMMDC1
A 0.700 GeneticVariation GWASCAT Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis. 23603761

2013
dbSNP: rs34536443
rs34536443
TYK2
0.700 GeneticVariation GWASCAT Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis. 23603761

2013