Disease: Lupus Erythematosus, Systemic
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs1050501
FCGR2B
0.732 0.440 1 161674008 missense variant T/C snv 0.16 0.19 15
rs1061622
TNFRSF1B
0.633 0.760 1 12192898 missense variant T/G snv 0.22 0.22 33
rs11580078
C1orf141 ; IL23R
0.724 0.240 1 67203951 intron variant C/A;G snv 14
rs1217691063
MTHFR
0.330 0.920 1 11796309 missense variant A/G snv 4.0E-06 7.0E-06 614
rs1801274
FCGR2A
0.597 0.800 1 161509955 missense variant A/C;G snv 4.0E-06; 0.48 46
rs200395694
MEF2D
1.000 0.080 1 156480799 intron variant G/A;C;T snv 2.7E-05; 1.2E-04; 1.6E-03 2
rs2066363
ADGRL2
0.724 0.240 1 81771892 intron variant C/T snv 0.71 14
rs2476601
AP4B1-AS1 ; PTPN22
0.498 0.800 1 113834946 missense variant A/G snv 0.93 0.93 121
rs33996649
PTPN22 ; AP4B1-AS1
0.732 0.400 1 113852067 missense variant C/T snv 1.7E-02 1.6E-02 13
rs34884278 0.724 0.240 1 172869708 intron variant C/T snv 0.63 14
rs396991
FCGR3A
0.742 0.480 1 161544752 missense variant A/C;G;T snv 0.33; 4.1E-06 14
rs55705316 0.724 0.240 1 206760172 regulatory region variant T/A;G snv 14
rs6679677
PHTF1
0.653 0.320 1 113761186 upstream gene variant C/A snv 6.7E-02 26
rs6689858
CRB1
0.724 0.240 1 197406337 intron variant T/C snv 0.39 14
rs7528684
FCRL3
0.752 0.560 1 157701026 upstream gene variant A/G snv 0.57 13
rs114846446
LINC01250
0.724 0.240 2 2944140 intron variant G/A snv 9.5E-03 14
rs1980422 0.776 0.320 2 203745673 intergenic variant C/A;T snv 9
rs1990760
IFIH1
0.672 0.480 2 162267541 missense variant C/T snv 0.50 0.45 33
rs2075184 0.724 0.240 2 102464132 intergenic variant T/C snv 0.78 14
rs231775
CTLA4
0.504 0.720 2 203867991 missense variant A/G;T snv 0.42; 4.0E-06 115
rs36001488
ATG16L1
0.724 0.240 2 233276621 intron variant C/T snv 0.44 14
rs4676410
GPR35
0.716 0.240 2 240624322 intron variant G/A snv 0.26 17
rs7568275
STAT4
0.827 0.120 2 191101726 intron variant G/C;T snv 6
rs7574865
STAT4
0.574 0.720 2 191099907 intron variant T/G snv 0.79 59
rs7579944 0.882 0.200 2 30222160 intergenic variant T/C;G snv 5