Disease: Primary malignant neoplasm of lung
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs2228000
XPC
0.585 0.560 3 14158387 missense variant G/A snv 0.24 0.21 53
rs2228001
XPC
0.570 0.480 3 14145949 missense variant G/T snv 0.63 0.65 60
rs2228526
ERCC6
0.752 0.200 10 49470671 missense variant T/C snv 0.22 0.19 13
rs2234922
EPHX1
0.630 0.440 1 225838705 missense variant A/G;T snv 0.19; 2.8E-05 42
rs2250889
SLC12A5-AS1 ; MMP9
0.667 0.520 20 46013767 missense variant G/C;T snv 0.88; 1.6E-05 24
rs2275913
IL17A
0.514 0.760 6 52186235 upstream gene variant G/A snv 0.28 105
rs25487
XRCC1
0.441 0.800 19 43551574 missense variant T/C snv 0.68 0.71 205
rs25489
XRCC1
0.550 0.720 19 43552260 missense variant C/G;T snv 8.5E-06; 7.1E-02 78
rs2736098
TERT
0.600 0.600 5 1293971 synonymous variant C/T snv 0.29 0.22 48
rs2736100
TERT
0.550 0.880 5 1286401 3 prime UTR variant C/A snv 0.52 83
rs2854509
XRCC1
0.807 0.160 19 43570445 intron variant T/G snv 0.80 6
rs2910164
MIR3142HG ; MIR146A
0.447 0.880 5 160485411 mature miRNA variant C/G snv 0.71; 4.1E-06 0.70 193
rs3136817
APEX1 ; OSGEP
0.732 0.280 14 20456275 intron variant T/C snv 0.23 12
rs3136820
APEX1
0.776 0.200 14 20456995 missense variant T/A;C;G snv 8
rs3218536
XRCC2
0.620 0.440 7 152648922 missense variant C/G;T snv 4.0E-06; 6.4E-02 37
rs34009635
MMP8
0.716 0.360 11 102713445 missense variant A/G snv 2.5E-03 6.2E-04 17
rs351855
FGFR4
0.597 0.560 5 177093242 missense variant G/A snv 0.33 0.26 58
rs35866072
MMP8
0.716 0.360 11 102713373 missense variant T/G snv 6.0E-02 9.8E-02 17
rs3731239
CDKN2A
0.763 0.240 9 21974219 intron variant A/G snv 0.26 10
rs3734091
XRCC4
0.689 0.280 5 83204915 missense variant G/T snv 2.3E-02 1.4E-02 19
rs3740393
BORCS7-ASMT ; AS3MT
0.776 0.280 10 102876898 intron variant G/C;T snv 10
rs3746444
MIR499A ; MIR499B ; MYH7B ; LOC107985393
0.514 0.760 20 34990448 mature miRNA variant A/G snv 0.20 0.19 105
rs3757441
EZH2
0.752 0.200 7 148827660 intron variant C/T snv 0.80 12
rs397507444
MTHFR
0.405 0.880 1 11794407 missense variant T/G snv 306
rs401681
CLPTM1L
0.620 0.640 5 1321972 intron variant C/T snv 0.48 42