DisGeNET - a database of gene-disease associations

List of shared variants

Brain Neoplasms, C0006118

Disease: Squamous cell carcinoma of the head and neck

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	Num. diseases
rs28934575	TP53	0.641	0.400	17	7674230	missense variant	C/A;G;T	snv		37
rs1057519975	TP53	0.649	0.480	17	7675209	missense variant	A/C;G;T	snv		34
rs121912666	TP53	0.645	0.360	17	7674872	missense variant	T/C;G	snv	8.0E-06	34
rs397516436	TP53	0.641	0.440	17	7674894	stop gained	G/A;C	snv		34
rs121913274	PIK3CA	0.645	0.320	3	179218304	missense variant	A/C;G;T	snv		33
rs760043106	TP53	0.645	0.440	17	7674947	missense variant	A/C;G;T	snv		32
rs28934574	TP53	0.658	0.440	17	7673776	missense variant	G/A;C	snv	4.0E-06	31
rs587778720	TP53	0.667	0.360	17	7674893	missense variant	C/A;G;T	snv	4.0E-06	31
rs121912656	TP53	0.662	0.560	17	7674229	missense variant	C/A;G;T	snv	4.0E-06; 4.0E-06	28
rs28934573	TP53	0.667	0.480	17	7674241	missense variant	G/A;C;T	snv	4.0E-06	28
rs1057519991	TP53	0.662	0.440	17	7675076	missense variant	T/A;C;G	snv	4.0E-06	26
rs121912660	TP53	0.683	0.240	17	7673781	missense variant	C/A;G;T	snv		26
rs121913275	PIK3CA	0.672	0.320	3	179218305	missense variant	G/A;C;T	snv	4.0E-06	26
rs1057519925	PIK3CA	0.683	0.560	3	179210291	missense variant	G/A;C	snv		25
rs138729528	TP53	0.677	0.480	17	7675089	missense variant	G/A;C	snv	1.6E-05	25
rs121913338	BRAF	0.677	0.400	7	140753354	missense variant	T/A;C;G	snv		24
rs587780070	TP53	0.683	0.320	17	7675077	missense variant	G/A;C;T	snv	4.0E-06	24
rs786201057	TP53	0.677	0.400	17	7675995	missense variant	G/A;C;T	snv		24
rs786201838	TP53	0.683	0.440	17	7674953	missense variant	T/A;C;G	snv		24
rs876658468	TP53	0.689	0.440	17	7674954	missense variant	G/A;C;T	snv		24
rs1057519747	TP53	0.716	0.280	17	7675094	missense variant	A/C;G;T	snv		23
rs121913286	PIK3CA	0.677	0.280	3	179218306	missense variant	C/A;G	snv		23
rs730882008	TP53	0.683	0.440	17	7673775	missense variant	C/A;G;T	snv	4.0E-06	23
rs1057519932	PIK3CA	0.683	0.320	3	179234298	missense variant	T/G	snv		22
rs1057519981	TP53	0.689	0.440	17	7674251	missense variant	A/C;G;T	snv		22