Disease: Thyroid Neoplasm
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs12769288
MGMT
0.882 0.080 10 129488086 intron variant C/T snv 0.10 3
rs12785878
NADSYN1
0.677 0.520 11 71456403 intron variant G/A;T snv 25
rs1297812518
LOC112268131 ; KLC1 ; XRCC3
0.763 0.160 14 103707168 missense variant G/A snv 1.3E-05 1.4E-05 9
rs13143866
IL21 ; IL21-AS1
0.851 0.200 4 122619603 intron variant G/A snv 0.24 4
rs1365943053
PTCH1
0.882 0.080 9 95516630 missense variant C/T snv 7.0E-06 3
rs1418810723
FN1
0.851 0.080 2 215409981 missense variant A/T snv 8.0E-06 9
rs1443434
FOXE1
0.851 0.080 9 97855197 3 prime UTR variant G/T snv 0.63 4
rs145475805
TG
0.882 0.080 8 132887509 missense variant A/G snv 8.8E-05 3.3E-04 4
rs17849071
PIK3CA
0.776 0.160 3 179218439 intron variant T/G snv 7.9E-02 8
rs17879961
CHEK2
0.597 0.480 22 28725099 missense variant A/C;G snv 4.1E-03 53
rs1799782
XRCC1
0.474 0.800 19 43553422 missense variant G/A snv 9.5E-02 7.0E-02 151
rs1799939
RET
0.658 0.280 10 43114671 missense variant G/A;C;T snv 0.21 27
rs1800858
RET
0.851 0.160 10 43100520 synonymous variant A/C;G snv 0.73 4
rs180414
SLC38A4
0.882 0.080 12 46775115 synonymous variant A/G snv 3.1E-03 3
rs1867277
PTCSC2 ; FOXE1
0.776 0.160 9 97853632 5 prime UTR variant A/G snv 0.63 10
rs187238
IL18
0.602 0.680 11 112164265 intron variant C/A;G snv 48
rs1946518
IL18
0.602 0.760 11 112164735 intron variant T/G snv 0.60 46
rs1946519
IL18
0.851 0.120 11 112164784 intron variant A/C snv 0.60 4
rs2060793
CYP2R1
0.776 0.240 11 14893764 upstream gene variant A/G snv 0.63 11
rs2072472
IL1R2
0.732 0.200 2 102026557 intron variant A/G snv 0.24 13
rs2145418 0.882 0.080 1 118422631 intergenic variant C/A snv 0.78 3
rs2221903
IL21-AS1 ; IL21
0.752 0.360 4 122617757 intron variant C/T snv 0.77 12
rs2227869
ERCC5 ; BIVM-ERCC5
0.790 0.240 13 102862735 missense variant G/A;C snv 4.3E-02 9
rs2227983
EGFR
0.658 0.520 7 55161562 missense variant G/A;C;T snv 0.29 31
rs2241880
SCARNA5 ; ATG16L1
0.627 0.600 2 233274722 missense variant A/G snv 0.45 0.44 37