DisGeNET - a database of gene-disease associations

List of shared variants

Diabetes, C0011847

Disease: Metabolic Syndrome X

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1884051	ESR1	0.882	0.080	6	151962144	intron variant	G/A	snv		0.60	4
rs2270565	UCP1	0.882	0.080	4	140562317	missense variant	T/A	snv	8.9E-02	6.5E-02	4
rs13038305	CST3	0.925	0.080	20	23629625	intron variant	C/T	snv		0.21	5
rs1884614	LOC105372629	0.882	0.080	20	44351879	non coding transcript exon variant	C/T	snv		0.18	5
rs4641	LMNA	0.851	0.120	1	156137743	splice region variant	C/T	snv	0.26	0.21	6
rs7204609	FTO	0.827	0.200	16	53799693	intron variant	T/C	snv		0.14	6
rs10010131	WFS1	0.827	0.120	4	6291188	intron variant	A/G	snv	0.66	0.63	7
rs1884613	LOC105372629	0.807	0.200	20	44351775	intron variant	C/A;G;T	snv			7
rs7578326	LOC646736	0.882	0.080	2	226155937	TF binding site variant	A/G	snv		0.36	7
rs7973260	KSR2	0.851	0.120	12	117937681	intron variant	A/G	snv		0.83	7
rs137853240	HNF1A	0.807	0.080	12	120994405	missense variant	G/A	snv		1.4E-05	8
rs1800592		0.807	0.200	4	140572807	upstream gene variant	T/C	snv		0.40	8
rs4864548	CLOCK	0.827	0.160	4	55547636	non coding transcript exon variant	G/A	snv		0.33	8
rs5128	APOC3	0.925	0.080	11	116832924	3 prime UTR variant	G/C	snv	0.84	0.87	8
rs2236242	SERPINA12	0.776	0.280	14	94493715	intron variant	T/A	snv		0.31	9
rs3732581	PARL	0.790	0.120	3	183840614	missense variant	C/G;T	snv	0.46; 1.2E-05		9
rs5015480		0.851	0.120	10	92705802	downstream gene variant	C/T	snv		0.42	9
rs1387153		0.807	0.200	11	92940662	downstream gene variant	C/G;T	snv			10
rs2237895	KCNQ1	0.790	0.240	11	2835964	intron variant	A/C;T	snv			10
rs6929846	BTN2A1	0.827	0.160	6	26458037	5 prime UTR variant	T/C	snv		0.70	10
rs780092	GCKR	0.827	0.160	2	27520287	intron variant	A/G	snv		0.18	10
rs121909244	PPARG	0.776	0.160	3	12434111	missense variant	C/A;T	snv	4.0E-06		11
rs1320702652	MFAP1	0.752	0.160	15	43824536	missense variant	G/A	snv	4.0E-06		11
rs17300539	ADIPOQ	0.752	0.320	3	186841671	upstream gene variant	G/A	snv		5.3E-02	11
rs185847354	ADIPOQ ; ADIPOQ-AS1	0.763	0.160	3	186854460	missense variant	T/C	snv	3.1E-04	7.0E-05	11