DisGeNET - a database of gene-disease associations

List of shared variants

Diabetes Mellitus, Non-Insulin-Dependent, C0011860

Disease: Liver carcinoma

Source: BEFREE ×

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs964372	MT1B	0.925	0.160	16	56652118	intron variant	C/G;T	snv			2
rs17572019	PPARGC1B	0.882	0.160	5	149832908	missense variant	G/A	snv	8.5E-02	6.9E-02	3
rs2073658	USF1	0.882	0.200	1	161040972	intron variant	C/T	snv		0.21	3
rs3025035	VEGFA	0.851	0.240	6	43783622	non coding transcript exon variant	C/T	snv		0.14	4
rs7732671	PPARGC1B	0.851	0.200	5	149832680	missense variant	G/C	snv	9.4E-02	0.11	4
rs13078	DICER1	0.827	0.280	14	95090410	3 prime UTR variant	A/T	snv		0.85	5
rs1993116	CYP2R1	0.827	0.200	11	14888688	intron variant	A/G	snv		0.65	6
rs2070150	ATF6	0.827	0.280	1	161791486	missense variant	G/C	snv	0.14	9.2E-02	6
rs4969168	SOCS3	0.790	0.480	17	78357712	3 prime UTR variant	A/G	snv		0.71	7
rs290481	TCF7L2	0.827	0.200	10	113164066	intron variant	C/T	snv		0.20	8
rs864745	JAZF1	0.763	0.320	7	28140937	intron variant	T/C	snv		0.41	8
rs3093059	CRP	0.752	0.520	1	159715346	upstream gene variant	A/G	snv		0.13	9
rs20551	EP300	0.752	0.320	22	41152004	missense variant	A/G	snv	0.31	0.23	10
rs290487	TCF7L2	0.776	0.280	10	113149972	intron variant	C/T	snv		0.16	10
rs3741219	MRPL23 ; H19 ; HOTS	0.776	0.280	11	1995389	non coding transcript exon variant	A/G	snv	0.42		10
rs391957	HSPA5 ; LOC107987127	0.763	0.240	9	125241745	non coding transcript exon variant	T/C	snv		0.72	10
rs1044250	ANGPTL4	0.807	0.240	19	8371280	missense variant	C/T	snv	0.30	0.29	12
rs769217	CAT	0.742	0.440	11	34461361	synonymous variant	C/T	snv	0.25	0.22	12
rs2241883	FABP1	0.763	0.360	2	88124547	missense variant	T/C	snv	0.30	0.29	13
rs2516839	USF1	0.732	0.320	1	161043331	5 prime UTR variant	C/T	snv		0.49	13
rs11077	POLR1C ; XPO5	0.732	0.320	6	43523209	3 prime UTR variant	T/G	snv		0.47	14
rs1927914	TLR4	0.732	0.520	9	117702447	upstream gene variant	G/A	snv		0.52	14
rs2149356	TLR4	0.742	0.360	9	117711921	intron variant	T/G	snv		0.54	14
rs14035	RAN	0.742	0.320	12	130876696	3 prime UTR variant	C/T	snv		0.33	15
rs184003	AGER	0.724	0.400	6	32182519	intron variant	C/A	snv	0.12	0.12	15