DisGeNET - a database of gene-disease associations

List of associated variants

IGA Glomerulonephritis, C0017661

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs4833095	TLR1	0.662	0.480	4	38798089	missense variant	T/C	snv	0.38	0.44	28
rs4961	ADD1	0.683	0.400	4	2904980	missense variant	G/A;T	snv	1.2E-05; 0.20		27
rs1799752	ACE	0.677	0.480	17	63488529	intron variant	-/TTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCATACAGTCACTTTT	delins			25
rs2227306	CXCL8	0.677	0.680	4	73741338	intron variant	C/T	snv		0.31	21
rs61747728	NPHS2	0.701	0.240	1	179557079	missense variant	C/T	snv	3.0E-02	2.8E-02	20
rs3077	HLA-DPA1	0.701	0.440	6	33065245	3 prime UTR variant	A/G	snv		0.29	16
rs4646	MIR4713HG ; CYP19A1	0.716	0.360	15	51210647	3 prime UTR variant	A/C	snv	0.67	0.70	16
rs1861494	IFNG-AS1 ; IFNG	0.716	0.400	12	68157629	intron variant	C/T	snv		0.75	15
rs9264942	LOC112267902 ; HLA-B	0.763	0.400	6	31306603	intron variant	T/C	snv		0.34	15
rs9277535	HLA-DPB1	0.724	0.440	6	33087084	3 prime UTR variant	A/G	snv		0.25	13
rs1800875	CMA1	0.742	0.360	14	24510132	upstream gene variant	C/T	snv		0.41	12
rs9138	SPP1	0.776	0.360	4	87983190	3 prime UTR variant	A/C;T	snv			12
rs4077515	CARD9	0.763	0.360	9	136372044	missense variant	C/A;T	snv	4.0E-06; 0.41		11
rs12917707	UMOD	0.827	0.200	16	20356368	upstream gene variant	G/T	snv		0.14	11
rs843720	ACYP2 ; LOC105374610	0.752	0.280	2	54283523	intron variant	T/G	snv		0.52	10
rs660895	HLA-DRB1	0.752	0.360	6	32609603	intergenic variant	A/G	snv		0.19	10
rs1520220	LINC02456 ; IGF1	0.807	0.280	12	102402744	intron variant	G/C;T	snv		0.76	9
rs1126616	SPP1	0.827	0.280	4	87982701	synonymous variant	C/G;T	snv	0.32	0.26	8
rs10004195	TLR10	0.790	0.320	4	38783103	upstream gene variant	T/A	snv		0.29	8
rs9275596		0.827	0.280	6	32713854	upstream gene variant	C/T	snv		0.66	7
rs6677604	CFH	0.827	0.200	1	196717788	intron variant	G/A	snv		0.23	7
rs2195239	LINC02456 ; IGF1	0.851	0.240	12	102462924	non coding transcript exon variant	C/G	snv		0.28	7
rs3803800	TNFSF13 ; TNFSF12-TNFSF13	0.807	0.240	17	7559652	missense variant	A/G	snv	0.70	0.64	7
rs11264799	FCRL3	0.851	0.240	1	157700967	upstream gene variant	C/T	snv		0.28	6
rs3218896	IL1R2	0.807	0.160	2	102015190	intron variant	T/C;G	snv			6