DisGeNET - a database of gene-disease associations

List of shared variants

Irritable Bowel Syndrome, C0022104

Disease: Inflammatory Bowel Diseases

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1800629	TNF	0.472	0.920	6	31575254	upstream gene variant	G/A	snv	0.12	0.14	169
rs1800872	IL19 ; IL10	0.495	0.840	1	206773062	5 prime UTR variant	T/G	snv		0.69	119
rs1800896	IL19 ; IL10	0.507	0.800	1	206773552	intron variant	T/C	snv		0.41	113
rs1800871	IL19 ; IL10	0.508	0.800	1	206773289	5 prime UTR variant	A/G	snv		0.69	108
rs2241880	SCARNA5 ; ATG16L1	0.627	0.600	2	233274722	missense variant	A/G	snv	0.45	0.44	37
rs5743836	TLR9	0.658	0.440	3	52226766	intron variant	A/G	snv		0.20	31
rs1861494	IFNG-AS1 ; IFNG	0.716	0.400	12	68157629	intron variant	C/T	snv		0.75	15
rs116855232	NUDT15	0.742	0.400	13	48045719	missense variant	C/T	snv	2.8E-02	1.1E-02	12
rs6478108	TNFSF15	0.763	0.200	9	114796423	intron variant	C/T	snv		0.73	10
rs1248696	DLG5	0.807	0.080	10	77856847	missense variant	T/A;C	snv	0.93		8
rs11190140	NKX2-3 ; LINC01475	0.827	0.160	10	99531836	upstream gene variant	T/C	snv		0.55	6
rs1384936174	NOD2	0.827	0.040	16	50710812	missense variant	G/A;T	snv	4.0E-06; 4.0E-06		6
rs3129891		0.851	0.160	6	32447303	downstream gene variant	G/A	snv		0.20	5
rs3765534	ABCC4	0.882	0.200	13	95163161	missense variant	C/T	snv	2.3E-02	1.2E-02	4
rs62636489	MIR9898 ; KRT8	0.925	0.040	12	52898860	missense variant	G/A	snv	7.6E-05	7.0E-06	3
rs149382949	ANKZF1	1.000	0.040	2	219232579	missense variant	G/A;C	snv	3.2E-05; 4.0E-06		2
rs750438327	TG	1.000	0.040	8	132888076	missense variant	G/A;C	snv	7.6E-05		2
rs77005575		1.000	0.040	6	32611931	intergenic variant	T/C	snv			2