Disease: Malignant Neoplasms
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs1217691063
MTHFR
0.330 0.920 1 11796309 missense variant A/G snv 4.0E-06 7.0E-06 614
rs113488022
BRAF
0.351 0.840 7 140753336 missense variant A/C;G;T snv 4.0E-06 490
rs121913377
BRAF
0.354 0.840 7 140753335 missense variant CA/AT;TT mnv 480
rs397507444
MTHFR
0.405 0.880 1 11794407 missense variant T/G snv 306
rs1695
GSTP1
0.457 0.880 11 67585218 missense variant A/G snv 0.34 0.36 188
rs1800896
IL19 ; IL10
0.507 0.800 1 206773552 intron variant T/C snv 0.41 113
rs854560
PON1
0.513 0.800 7 95316772 missense variant A/C;G;N;T snv 0.29 113
rs861539
KLC1 ; XRCC3
0.519 0.680 14 103699416 missense variant G/A snv 0.29 0.30 104
rs387907272
MYD88
0.572 0.520 3 38141150 stop lost T/C snv 5.2E-05 7.0E-06 73
rs20541
IL13 ; TH2LCRR
0.585 0.720 5 132660272 missense variant A/G snv 0.72 0.77 52
rs12917
MGMT ; LOC105378560
0.605 0.480 10 129708019 missense variant C/T snv 0.14 0.14 45
rs112445441
KRAS
0.658 0.400 12 25245347 missense variant C/A;G;T snv 32
rs144848
BRCA2
0.653 0.440 13 32332592 missense variant A/C snv 0.28 0.23 29
rs20575
TNFRSF10A
0.645 0.440 8 23201811 missense variant C/G snv 0.54 0.44 29
rs2308321
MGMT
0.653 0.480 10 129766800 missense variant A/G snv 9.3E-02 8.7E-02 29
rs568408
IL12A ; IL12A-AS1
0.649 0.600 3 159995680 3 prime UTR variant G/A snv 0.16 29
rs1346044
WRN
0.708 0.440 8 31167138 missense variant T/C snv 0.24 0.23 23
rs1805329
RAD23B
0.732 0.400 9 107322047 missense variant C/T snv 0.20 0.16 15
rs2682818
MIR618 ; LOC105369869 ; LIN7A
0.742 0.320 12 80935757 non coding transcript exon variant A/C;T snv 0.83 14
rs172378
C1QA
0.790 0.240 1 22638945 synonymous variant A/G snv 0.49 0.51 11
rs2308327
MGMT
0.790 0.280 10 129766906 missense variant A/G snv 9.4E-02 8.7E-02 10
rs3212961
ERCC1
0.827 0.200 19 45419065 intron variant G/A;T snv 1.9E-04; 0.20 7