DisGeNET - a database of gene-disease associations

List of shared variants

Tuberculosis, C0041296

Disease: Crohn Disease

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs17525495	LTA4H	0.882	0.080	12	96035599	5 prime UTR variant	G/A	snv		9.9E-02	4
rs2234711	IFNGR1	0.827	0.080	6	137219383	5 prime UTR variant	A/G	snv		0.43	6
rs4958843	IRGM	0.925	0.080	5	150845362	upstream gene variant	T/C	snv		0.21	2
rs5743278	NOD2	0.882	0.080	16	50712085	missense variant	C/G	snv	3.2E-03	1.3E-02	3
rs72553867	IRGM	0.925	0.080	5	150848404	missense variant	C/A;T	snv	4.9E-02		2
rs1816702	TLR2	0.827	0.120	4	153688371	non coding transcript exon variant	T/C	snv		0.79	6
rs10065172	IRGM	0.790	0.200	5	150848436	synonymous variant	C/T	snv	0.17	0.21	8
rs754342091	TLR4	0.790	0.200	9	117712421	missense variant	A/G	snv	3.2E-05	1.4E-05	7
rs13361189		0.752	0.240	5	150843825	upstream gene variant	T/C	snv		0.21	13
rs12212067	FOXO3	0.716	0.320	6	108659993	intron variant	T/G	snv		0.14	20
rs352139	TLR9	0.732	0.320	3	52224356	intron variant	T/C	snv	0.51	0.54	18
rs4804803	CD209	0.732	0.360	19	7747847	upstream gene variant	A/G	snv		0.26	15
rs5030737	MBL2	0.752	0.360	10	52771482	missense variant	G/A	snv	5.6E-02	5.0E-02	11
rs1861494	IFNG-AS1 ; IFNG	0.716	0.400	12	68157629	intron variant	C/T	snv		0.75	15
rs10754558	NLRP3	0.695	0.480	1	247448734	3 prime UTR variant	G/C;T	snv			20
rs3751143	P2RX7 ; LOC105370032	0.742	0.480	12	121184501	missense variant	A/C;G	snv	0.19; 4.0E-06		12
rs4833095	TLR1	0.662	0.480	4	38798089	missense variant	T/C	snv	0.38	0.44	28
rs2066844	NOD2	0.587	0.520	16	50712015	missense variant	C/T	snv	2.6E-02	2.9E-02	54
rs2569190	CD14 ; TMCO6	0.620	0.560	5	140633331	intron variant	A/G	snv		0.57	39
rs17235409	SLC11A1	0.653	0.600	2	218395009	missense variant	G/A;C	snv	4.9E-02; 4.1E-06		31
rs2066845	NOD2	0.611	0.600	16	50722629	missense variant	G/C;T	snv	1.1E-02; 2.2E-04		46
rs1799724	LTA ; TNF	0.600	0.680	6	31574705	upstream gene variant	C/T	snv		8.5E-02	47
rs187238	IL18	0.602	0.680	11	112164265	intron variant	C/A;G	snv			48
rs763780	IL17F	0.531	0.720	6	52236941	missense variant	T/C	snv	6.7E-02	6.6E-02	87
rs1128503	ABCB1	0.564	0.760	7	87550285	synonymous variant	A/G	snv	0.54	0.63	64