DisGeNET - a database of gene-disease associations

List of associated variants

Tuberculosis, C0041296

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs763059810	CXCR4	0.623	0.600	2	136115750	missense variant	T/C	snv	4.0E-06		41
rs17235409	SLC11A1	0.653	0.600	2	218395009	missense variant	G/A;C	snv	4.9E-02; 4.1E-06		31
rs11674595	IL1R2	0.763	0.200	2	101994530	intron variant	T/C	snv		0.22	13
rs3811047	IL37	0.807	0.400	2	112913833	missense variant	A/G	snv	0.71	0.60	10
rs4851527	IL1R2	0.790	0.160	2	102005914	intron variant	A/G	snv		0.63	7
rs17235416	SLC11A1	0.807	0.200	2	218395091	3 prime UTR variant	TGTG/-	del		8.4E-02	6
rs3917225	IL1R1	0.807	0.160	2	102152842	intron variant	A/G	snv		0.36	6
rs10490571	IL1R1	0.827	0.320	2	102100877	intron variant	C/T	snv		0.29	5
rs3731865	SLC11A1	0.882	0.160	2	218385280	non coding transcript exon variant	G/A;C;T	snv	0.23; 1.4E-04		5
rs2723176	IL37	0.851	0.200	2	112914932	intron variant	A/C;G	snv			4
rs12998782	MARCO	0.882	0.160	2	118967804	intron variant	C/T	snv		0.19	3
rs201565523	SLC11A1	0.925	0.240	2	218390027	missense variant	C/T	snv	2.9E-04	7.7E-05	3
rs3755276	IL18R1	0.925	0.120	2	102361999	intron variant	C/T	snv		0.45	3
rs1055229	LINC01857	1.000	0.040	2	207666959	non coding transcript exon variant	C/T	snv		0.26	2
rs1135791	SP110	0.925	0.080	2	230177560	missense variant	A/G	snv	0.42	0.40	2
rs1974675	IL18R1	1.000	0.040	2	102369915	intron variant	G/A	snv		0.45	2
rs2723186	IL37	0.925	0.160	2	112917503	intron variant	A/G;T	snv		0.91	2
rs2723187	IL37	1.000	0.040	2	112917692	missense variant	C/T	snv	6.8E-02	1.0E-01	2
rs34448891	SLC11A1	0.925	0.160	2	218381927	upstream gene variant	TGTGTGTG/-;TG;TGTG;TGTGTG;TGTGTGTGTG;TGTGTGTGTGTG;TGTGTGTGTGTGTG;TGTGTGTGTGTGTGTG	delins			2
rs3731863	SLC11A1	0.925	0.040	2	218387485	intron variant	C/T	snv		8.0E-02	2
rs6751745	MARCO	0.925	0.080	2	118983428	intron variant	C/T	snv		0.31	2
rs772717932	IL1B	1.000	0.040	2	112830530	missense variant	C/A;T	snv	4.0E-06; 1.6E-05		2
rs80292941	CYTOR ; LOC101928152	1.000	0.040	2	87480257	non coding transcript exon variant	A/T	snv		0.16	2
rs9061	SP110 ; SP140	0.925	0.080	2	230212395	missense variant	C/T	snv	0.11	9.1E-02	2
rs956730	IL1R1	0.925	0.120	2	102141656	intron variant	G/A	snv		0.42	2