DisGeNET - a database of gene-disease associations

List of shared variants

High density lipoprotein measurement, C0392885

Disease: Hypertensive disease

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs77375493	INSL6 ; JAK2	0.458	0.760	9	5073770	missense variant	G/A;T	snv	3.5E-04		187
rs9939609	FTO	0.559	0.720	16	53786615	intron variant	T/A	snv		0.41	98
rs429358	APOE	0.590	0.600	19	44908684	missense variant	T/C	snv	0.14	0.16	66
rs1333049	CDKN2B-AS1	0.614	0.520	9	22125504	intron variant	G/C	snv		0.41	60
rs268	LPL	0.637	0.480	8	19956018	missense variant	A/G	snv	1.3E-02	1.3E-02	41
rs5882	CETP	0.649	0.400	16	56982180	missense variant	G/A;C	snv	0.62		35
rs13107325	SLC39A8	0.776	0.520	4	102267552	missense variant	C/A;T	snv	4.0E-06; 4.5E-02		34
rs662799	APOA5	0.689	0.480	11	116792991	upstream gene variant	G/A	snv		0.90	33
rs11066280	HECTD4	0.742	0.280	12	112379979	intron variant	T/A	snv		7.0E-03	27
rs3135506	APOA5	0.708	0.400	11	116791691	missense variant	G/A;C	snv	3.0E-05; 6.8E-02		26
rs3764261		0.732	0.280	16	56959412	upstream gene variant	C/A	snv		0.31	26
rs708272	CETP	0.708	0.440	16	56962376	intron variant	G/A	snv	0.42	0.38	24
rs79105258	CUX2			12	111280427	intron variant	C/A;T	snv			24
rs1558902	FTO	0.827	0.120	16	53769662	intron variant	T/A	snv		0.31	21
rs12229654		0.763	0.320	12	110976657	intergenic variant	T/G	snv		4.8E-03	20
rs12579302	ATP2B1	0.851	0.120	12	89656726	intron variant	A/G	snv		0.15	19
rs1800775	CETP	0.790	0.240	16	56961324	upstream gene variant	C/A;G	snv	0.51; 5.7E-06		18
rs2943641		0.763	0.160	2	226229029	intergenic variant	T/C	snv		0.67	18
rs174546	FADS1 ; FADS2	0.807	0.200	11	61802358	3 prime UTR variant	C/T	snv		0.28	17
rs651821	APOA5	0.851	0.360	11	116791863	5 prime UTR variant	C/T	snv	0.88	0.89	17
rs1800588	ALDH1A2 ; LIPC	0.790	0.200	15	58431476	intron variant	C/G;T	snv	0.30		16
rs2070895	LIPC ; ALDH1A2	0.807	0.120	15	58431740	intron variant	G/A	snv		0.33	15
rs174577	FADS2	1.000	0.080	11	61837342	intron variant	C/A	snv		0.38	13
rs11643718	SLC12A3	0.807	0.240	16	56899607	missense variant	G/A	snv	0.11	8.4E-02	10
rs711752	CETP	1.000	0.040	16	56962299	splice region variant	G/A;C	snv			10