DisGeNET - a database of gene-disease associations

List of shared variants

Carcinogenesis, C0596263

Disease: Liver carcinoma

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs57408770	MIR3131 ; IHH	1.000	0.080	2	219058688	non coding transcript exon variant	-/AAG	delins			2
rs80291436	VCX	1.000	0.080	X	7843706	missense variant	T/A;C;G	snv	4.9E-05; 0.19		3
rs12774070	ADAMTS14	0.925	0.120	10	70753879	missense variant	C/A;G	snv	0.23	0.19	4
rs779196500	TP53	0.882	0.120	17	7675187	missense variant	G/A	snv	4.0E-06		5
rs61573157	ADAMTS14	0.882	0.160	10	70760503	missense variant	C/T	snv	8.6E-02	7.5E-02	6
rs7664413	VEGFC ; LOC105377555	0.851	0.160	4	176687553	intron variant	C/T	snv	0.24	0.25	7
rs1048638	CA9	0.807	0.160	9	35681125	3 prime UTR variant	C/A;G	snv			10
rs137854573	APC	0.807	0.120	5	112828889	stop gained	C/T	snv			10
rs3138053	NFKBIA	0.790	0.280	14	35405648	upstream gene variant	T/C	snv		0.26	10
rs10036748	TNIP1	0.752	0.360	5	151078585	intron variant	C/A;T	snv			11
rs13706	CDC6	0.776	0.200	17	40300899	missense variant	G/A;C	snv	0.15; 8.0E-06		11
rs7708392	TNIP1	0.732	0.400	5	151077924	intron variant	G/C	snv		0.44	13
rs132770	DESI1 ; XRCC6	0.752	0.320	22	41621260	5 prime UTR variant	A/G	snv		0.83	14
rs5751129	XRCC6 ; DESI1	0.752	0.320	22	41619761	intron variant	C/T	snv		0.69	14
rs1047840	EXO1	0.708	0.280	1	241878999	missense variant	G/A	snv	0.36	0.40	19
rs2267437	DESI1 ; XRCC6	0.724	0.320	22	41620695	intron variant	C/A;G	snv			19
rs942158624	TP53	0.724	0.320	17	7674948	missense variant	T/A	snv			19
rs2066827	GPR19 ; CDKN1B	0.695	0.320	12	12718165	missense variant	T/A;C;G	snv	1.6E-04; 1.6E-05; 0.26		21
rs187115	CD44	0.695	0.320	11	35154612	intron variant	T/C	snv		0.37	22
rs696	NFKBIA	0.708	0.520	14	35401887	3 prime UTR variant	C/T	snv		0.45	22
rs1057519747	TP53	0.716	0.280	17	7675094	missense variant	A/C;G;T	snv			23
rs121913503	IDH2	0.689	0.200	15	90088606	missense variant	C/A;T	snv			23
rs11134527	MIR218-2 ; SLIT3	0.677	0.400	5	168768351	intron variant	G/A	snv		0.25	24
rs6505162	NSRP1 ; MIR3184 ; MIR423	0.695	0.320	17	30117165	5 prime UTR variant	A/C;T	snv	0.50; 3.1E-05		25
rs121912660	TP53	0.683	0.240	17	7673781	missense variant	C/A;G;T	snv			26