Disease: Liver carcinoma
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs1870134
XPC ; LSM3
0.827 0.120 3 14178523 missense variant G/C;T snv 4.2E-02; 8.1E-06 5
rs25490
XRCC1
0.851 0.120 19 43552189 missense variant T/C snv 7.2E-03 2.6E-02 4
rs1042489
BIRC5
0.851 0.160 17 78224125 3 prime UTR variant T/C snv 0.40 5
rs1076064
PPARGC1B ; MIR378A
0.851 0.160 5 149732603 intron variant A/G snv 0.47 4
rs6147150
ERBB4
0.827 0.160 2 211380365 3 prime UTR variant -/AAAATAGGATTG delins 5
rs121913396
CTNNB1
0.732 0.200 3 41224607 missense variant A/C;G;T snv 13
rs12338
CTSB
0.807 0.200 8 11853379 missense variant G/A;C;T snv 8.0E-06; 0.38; 2.4E-05 10
rs748500299
PTGS2
0.790 0.200 1 186675960 missense variant T/A;C snv 4.0E-06; 4.0E-06 8
rs10012
CYP1B1 ; CYP1B1-AS1
0.716 0.280 2 38075247 missense variant G/C snv 0.31 0.36 16
rs1047840
EXO1
0.708 0.280 1 241878999 missense variant G/A snv 0.36 0.40 19
rs145204276
ZBTB37 ; SNORD74 ; SNORD75 ; GAS5 ; SNORD77 ; SNORA103 ; SNORD76
0.658 0.320 1 173868254 splice donor variant CAAGG/- delins 8.8E-02 31
rs2066827
GPR19 ; CDKN1B
0.695 0.320 12 12718165 missense variant T/A;C;G snv 1.6E-04; 1.6E-05; 0.26 21
rs2077647
ESR1
0.732 0.320 6 151807942 synonymous variant T/A;C snv 8.1E-06; 0.46 16
rs2853669
TERT
0.649 0.320 5 1295234 upstream gene variant A/G snv 0.25 35
rs3798577
ESR1
0.742 0.320 6 152099995 3 prime UTR variant T/C snv 0.45 16
rs864745
JAZF1
0.763 0.320 7 28140937 intron variant T/C snv 0.41 12
rs1057520005
TP53
0.742 0.360 17 7673800 missense variant C/A;G snv 14
rs16917496
KMT5A
0.689 0.360 12 123409283 3 prime UTR variant C/G;T snv 21
rs2273535
AURKA
0.645 0.360 20 56386485 missense variant A/C;T snv 0.28 38
rs743572
CYP17A1
0.672 0.360 10 102837395 5 prime UTR variant A/G;T snv 0.40; 8.1E-06 24
rs20576
TNFRSF10A
0.637 0.400 8 23200707 missense variant T/G snv 0.15 0.14 34
rs2298881
ERCC1
0.653 0.400 19 45423658 intron variant C/A;T snv 25
rs4143815
CD274
0.689 0.400 9 5468257 3 prime UTR variant G/C snv 0.23 20
rs6259
SHBG
0.658 0.400 17 7633209 missense variant G/A snv 8.9E-02 8.1E-02 27
rs1800682
ACTA2 ; FAS
0.637 0.440 10 88990206 non coding transcript exon variant A/G snv 0.54 32