Disease: Secondary malignant neoplasm of lymph node
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs104894230
HRAS ; LRRC56
0.564 0.600 11 534288 missense variant C/A;G;T snv 73
rs10505477
CASC8 ; PCAT1 ; POU5F1B
0.658 0.400 8 127395198 intron variant A/G snv 0.40 31
rs1057519847
EGFR
0.570 0.560 7 55191821 missense variant CT/AG mnv 72
rs1057519848
EGFR
0.570 0.560 7 55191822 missense variant TG/GT mnv 72
rs10877887
LINC01465 ; MIRLET7I
0.701 0.440 12 62603400 non coding transcript exon variant T/C snv 0.42 18
rs10889677
IL23R
0.627 0.720 1 67259437 3 prime UTR variant C/A snv 0.27 40
rs1131691014
TP53
0.439 0.800 17 7676154 frameshift variant -/C ins 214
rs121434568
EGFR
0.568 0.560 7 55191822 missense variant T/A;G snv 73
rs121913377
BRAF
0.354 0.840 7 140753335 missense variant CA/AT;TT mnv 480
rs12918952
WWOX
0.851 0.120 16 78386878 missense variant G/A;C;T snv 7
rs13042395
SLC52A3
0.752 0.160 20 773867 intron variant C/T snv 5.9E-02 13
rs1360485
HMGB1
0.742 0.320 13 30457747 3 prime UTR variant C/T snv 0.58 16
rs145204276
ZBTB37 ; SNORD74 ; SNORD75 ; GAS5 ; SNORD77 ; SNORA103 ; SNORD76
0.658 0.320 1 173868254 splice donor variant CAAGG/- delins 8.8E-02 31
rs16893344
CCN4
0.807 0.160 8 133194036 intron variant C/T snv 0.29 7
rs1800624
PBX2 ; AGER
0.658 0.480 6 32184610 upstream gene variant A/G;T snv 33
rs1800872
IL19 ; IL10
0.495 0.840 1 206773062 5 prime UTR variant T/G snv 0.69 119
rs2249825
HMGB1
0.695 0.440 13 30463766 5 prime UTR variant G/A;C;T snv 23
rs2275913
IL17A
0.514 0.760 6 52186235 upstream gene variant G/A snv 0.28 105
rs397507444
MTHFR
0.405 0.880 1 11794407 missense variant T/G snv 306
rs4759314
HOTAIR
0.649 0.440 12 53968051 non coding transcript exon variant G/A snv 0.93 31
rs6983267
PCAT1 ; CCAT2 ; CASC8 ; POU5F1B
0.578 0.440 8 127401060 non coding transcript exon variant G/T snv 0.37 62
rs699947
VEGFA
0.570 0.680 6 43768652 upstream gene variant A/C;T snv 67
rs727503094
LRRC56 ; HRAS
0.633 0.440 11 534287 missense variant GC/AG;AT;TA;TT mnv 41
rs763110
FASLG
0.653 0.560 1 172658358 upstream gene variant C/T snv 0.49 30
rs878854066
TP53
0.439 0.800 17 7676153 missense variant GG/AC mnv 213