DisGeNET - a database of gene-disease associations

List of associated variants

Secondary malignant neoplasm of lymph node, C0686619

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs560890523	KRAS	1.000	0.080	12	25205729	3 prime UTR variant	TT/-;T	delins			3
rs10420252	COX6B1	1.000	0.080	19	35648270	upstream gene variant	G/A	snv		9.7E-02	2
rs14304	CCL18	1.000	0.080	17	36071135	3 prime UTR variant	T/C	snv		0.78	2
rs57698689	KRAS	1.000	0.080	12	25205729	3 prime UTR variant	TT/-;T	delins		0.48	2
rs6510502	COX6B1	1.000	0.080	19	35647577	upstream gene variant	A/C;G	snv			2
rs7166348	IGF1R	1.000	0.080	15	98704566	intron variant	G/A;T	snv		0.21	2
rs11581557	TRIT1	1.000	0.080	1	39862786	intron variant	A/C;T	snv			1
rs1187825488	LINC00960 ; MIR4273 ; ZNF717	1.000	0.080	3	75737670	frameshift variant	TT/-	del		7.9E-04	1
rs11889031	LOC101927840	1.000	0.080	2	203934671	upstream gene variant	C/T	snv		0.15	1
rs1190271	POPDC3	1.000	0.080	6	105176946	intron variant	G/A;C	snv			1
rs34904192	MIR155HG	1.000	0.080	21	25569623	intron variant	G/A	snv		0.12	1
rs3760469	NME1-NME2 ; NME1	1.000	0.080	17	51153191	upstream gene variant	T/G	snv		0.55	1
rs559635697	RHOBTB2	1.000	0.080	8	23007068	missense variant	C/A;T	snv	2.8E-05		1
rs7186053	CDH1	1.000	0.080	16	68805390	intron variant	A/G	snv		0.69	1
rs761797378	MIR4273 ; LINC00960 ; ZNF717	1.000	0.080	3	75737671	missense variant	T/A	snv	2.0E-05	2.0E-05	1
rs778962647	RUNX1T1	1.000	0.080	8	91986282	missense variant	G/T	snv	4.0E-06		1
rs12774070	ADAMTS14	0.925	0.120	10	70753879	missense variant	C/A;G	snv	0.23	0.19	4
rs2064863	AURKA	0.925	0.120	20	56387716	intron variant	T/A;C;G	snv			4
rs2071676	ARHGEF39 ; CA9	0.925	0.120	9	35674056	missense variant	G/A	snv	0.37	0.30	4
rs3748093	BRAF	0.925	0.120	7	140800651	intron variant	T/A	snv		1.5E-02	4
rs8371	XIAP	0.925	0.120	X	123912065	3 prime UTR variant	C/T	snv	0.25	0.19	4
rs9856	XIAP	0.925	0.120	X	123911791	3 prime UTR variant	C/T	snv	0.57		4
rs11600655	PLAAT3	0.925	0.120	11	63606853	intron variant	G/C	snv		0.27	2
rs2288496	TSHR ; LOC101928462	0.925	0.120	14	81145770	3 prime UTR variant	T/C	snv		0.39	2
rs7628626	TIMMDC1 ; CD80	0.925	0.120	3	119525574	3 prime UTR variant	A/C	snv		0.82	2