DisGeNET - a database of gene-disease associations

List of associated variants

Secondary malignant neoplasm of lymph node, C0686619

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs2236338	GZMB	0.851	0.120	14	24631076	missense variant	A/G	snv	0.24	0.25	6
rs10491121	LOC101927369 ; CCL4	0.882	0.120	17	36102943	upstream gene variant	G/A	snv		0.32	5
rs11125	LGALS3	0.851	0.120	14	55145121	missense variant	A/T	snv	6.5E-02	5.7E-02	5
rs28382575	MMP11	0.851	0.120	22	23783502	synonymous variant	T/C	snv	2.2E-02	1.8E-02	5
rs2881766	ESR1	0.882	0.120	6	151797984	intron variant	T/G	snv		0.35	5
rs767741751	MCPH1 ; ANGPT2	0.851	0.120	8	6562846	missense variant	C/A	snv	4.0E-06		5
rs770327175	CXCR4	0.851	0.120	2	136115878	missense variant	C/A;T	snv	8.0E-06		5
rs12774070	ADAMTS14	0.925	0.120	10	70753879	missense variant	C/A;G	snv	0.23	0.19	4
rs2064863	AURKA	0.925	0.120	20	56387716	intron variant	T/A;C;G	snv			4
rs2071504	POLR2A	0.882	0.120	17	7502618	non coding transcript exon variant	C/T	snv	0.18	0.17	4
rs2071676	ARHGEF39 ; CA9	0.925	0.120	9	35674056	missense variant	G/A	snv	0.37	0.30	4
rs2105269	GALNT16	0.882	0.120	14	69280517	intron variant	A/G	snv		0.35	4
rs3218038	CCNE1	0.882	0.120	19	29814988	intron variant	G/T	snv		9.1E-02	4
rs3748093	BRAF	0.925	0.120	7	140800651	intron variant	T/A	snv		1.5E-02	4
rs438034	CENPF	0.882	0.120	1	214657274	stop gained	A/G;T	snv	0.61		4
rs4719839	LOC105375199 ; LOC105375200	0.882	0.120	7	25946953	downstream gene variant	G/A;C	snv			4
rs6720283	COL6A3	0.882	0.120	2	237401239	intron variant	G/A	snv		0.31	4
rs738722	CHEK2	0.882	0.120	22	28734024	intron variant	T/C	snv		0.67	4
rs8371	XIAP	0.925	0.120	X	123912065	3 prime UTR variant	C/T	snv	0.25	0.19	4
rs9679162	GALNT14	0.882	0.120	2	31024648	intron variant	G/T	snv		0.48	4
rs9856	XIAP	0.925	0.120	X	123911791	3 prime UTR variant	C/T	snv	0.57		4
rs10754339	VTCN1	0.882	0.120	1	117147650	3 prime UTR variant	G/A	snv	0.88	0.76	3
rs1256054	ESR2	0.882	0.120	14	64249595	synonymous variant	G/C	snv	2.8E-03	9.6E-04	3
rs1455751791	ESR1	0.882	0.120	6	152011735	synonymous variant	C/G	snv	4.0E-06		3
rs17530068	LOC105377871	0.882	0.120	6	81483392	intergenic variant	T/C	snv		0.19	3