DisGeNET - a database of gene-disease associations

List of associated variants

Secondary malignant neoplasm of lymph node, C0686619

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs9331888	CLU ; MIR6843	0.827	0.200	8	27611345	5 prime UTR variant	C/G	snv	0.35	0.28	5
rs770327175	CXCR4	0.851	0.120	2	136115878	missense variant	C/A;T	snv	8.0E-06		5
rs2881766	ESR1	0.882	0.120	6	151797984	intron variant	T/G	snv		0.35	5
rs11099592	HPSE	0.851	0.160	4	83309466	missense variant	T/C	snv	0.78	0.80	5
rs1143630	IL1B	0.827	0.160	2	112834078	intron variant	T/A;G	snv			5
rs11125	LGALS3	0.851	0.120	14	55145121	missense variant	A/T	snv	6.5E-02	5.7E-02	5
rs10491121	LOC101927369 ; CCL4	0.882	0.120	17	36102943	upstream gene variant	G/A	snv		0.32	5
rs767741751	MCPH1 ; ANGPT2	0.851	0.120	8	6562846	missense variant	C/A	snv	4.0E-06		5
rs28382575	MMP11	0.851	0.120	22	23783502	synonymous variant	T/C	snv	2.2E-02	1.8E-02	5
rs42490	RIPK2	0.882	0.160	8	89766285	intron variant	G/A	snv		0.60	5
rs2288947	TINCR	0.827	0.160	19	5562104	3 prime UTR variant	G/A	snv		0.45	5
rs2622621	ABCG2	0.851	0.240	4	88109768	intron variant	C/A;G	snv			6
rs2228468	ACKR2 ; KRBOX1 ; CYP8B1	0.882	0.120	3	42865620	missense variant	A/C;T	snv	0.43; 8.3E-03		6
rs514049	ADAM10	0.827	0.160	15	58750164	intron variant	C/A	snv		0.57	6
rs61573157	ADAMTS14	0.882	0.160	10	70760503	missense variant	C/T	snv	8.6E-02	7.5E-02	6
rs3829078	CA9	0.851	0.160	9	35679254	missense variant	A/G;T	snv	8.2E-02		6
rs6691378	CHI3L1	0.882	0.160	1	203187994	upstream gene variant	G/A	snv		0.19	6
rs2236338	GZMB	0.851	0.120	14	24631076	missense variant	A/G	snv	0.24	0.25	6
rs4693608	HPSE	0.827	0.200	4	83320204	intron variant	G/A;C	snv			6
rs2236142	HSCB ; CHEK2	0.827	0.120	22	28741956	5 prime UTR variant	G/C	snv		0.66	6
rs13140012	LOC105377596 ; MTNR1A	0.827	0.320	4	186544404	intron variant	T/A	snv		0.41	6
rs11539752	LOC107984667 ; GZMB	0.882	0.120	14	24632383	missense variant	G/C	snv	0.21	0.26	6
rs738792	MMP11	0.827	0.240	22	23779191	missense variant	C/T	snv	0.84	0.80	6
rs1292037	VMP1 ; MIR21	0.827	0.200	17	59841547	3 prime UTR variant	T/C	snv		0.18	6
rs16893344	CCN4	0.807	0.160	8	133194036	intron variant	C/T	snv		0.29	7