DisGeNET - a database of gene-disease associations

List of associated variants

Infection caused by Helicobacter pylori, C0850666

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1179251	IL22 ; LOC105369818	0.763	0.320	12	68251271	intron variant	C/G	snv		0.18	14
rs2015620	IL32	0.882	0.120	16	3073560	intron variant	A/G;T	snv			3
rs1800795	IL6-AS1 ; IL6 ; STEAP1B	0.494	0.840	7	22727026	intron variant	C/G	snv		0.71	140
rs2228145	IL6R	0.602	0.720	1	154454494	missense variant	A/C;T	snv	0.38; 1.2E-05		57
rs718226	LOC102724907	0.882	0.120	16	50735652	intron variant	A/G	snv		0.36	4
rs7205423	LOC102724907	1.000	0.040	16	50735351	intron variant	C/G;T	snv			1
rs1217691063	MTHFR	0.330	0.920	1	11796309	missense variant	A/G	snv	4.0E-06	7.0E-06	614
rs2075820	NOD1	0.790	0.200	7	30452621	missense variant	C/T	snv	0.27	0.28	10
rs2709800	NOD1	0.882	0.120	7	30473155	intron variant	A/C	snv		0.53	4
rs2066842	NOD2	0.763	0.200	16	50710713	missense variant	C/A;T	snv	4.0E-06; 0.19		15
rs2297518	NOS2	0.658	0.480	17	27769571	missense variant	G/A	snv	0.18	0.17	30
rs6912200	PGC	0.925	0.080	6	41750170	intron variant	C/T	snv		0.54	3
rs1801282	PPARG	0.500	0.840	3	12351626	missense variant	C/G	snv	0.11	8.9E-02	131
rs1805192	PPARG	0.510	0.840	3	12379739	missense variant	C/G	snv			121
rs1330344	PTGS1	0.925	0.120	9	122369409	upstream gene variant	C/T	snv		0.69	2
rs12229892	PTPN11	0.807	0.240	12	112485589	intron variant	G/A	snv		1.4E-02	6
rs2301756	PTPN11	0.851	0.120	12	112452972	intron variant	A/G	snv		0.21	4
rs1402686368	SERPINE1	1.000	0.040	7	101133793	missense variant	G/A	snv	4.0E-06	7.0E-06	1
rs10499563	STEAP1B	0.807	0.120	7	22720869	intron variant	T/C	snv		0.21	7
rs3804099	TLR2	0.627	0.680	4	153703504	synonymous variant	T/C	snv	0.40	0.48	40
rs3804100	TLR2	0.633	0.720	4	153704257	synonymous variant	T/C	snv	9.0E-02	6.7E-02	36
rs121917864	TLR2	0.645	0.520	4	153704936	missense variant	C/T	snv	8.8E-05	9.8E-05	31
rs4986790	TLR4	0.438	0.800	9	117713024	missense variant	A/G;T	snv	6.1E-02; 4.0E-06		223
rs4986791	TLR4	0.456	0.840	9	117713324	missense variant	C/T	snv	5.7E-02	4.9E-02	182
rs11536878	TLR4	0.827	0.240	9	117709275	intron variant	C/A	snv		9.5E-02	5