Disease: Squamous cell carcinoma
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs121434569
EGFR-AS1 ; EGFR
0.581 0.520 7 55181378 missense variant C/T snv 2.8E-05 5.6E-05 70
rs11549465
HIF1A-AS3 ; HIF1A
0.597 0.680 14 61740839 missense variant C/T snv 8.8E-02 7.7E-02 55
rs2736098
TERT
0.600 0.600 5 1293971 synonymous variant C/T snv 0.29 0.22 48
rs121913273
PIK3CA
0.605 0.440 3 179218294 missense variant G/A;C snv 44
rs1138272
GSTP1
0.611 0.600 11 67586108 missense variant C/T snv 5.9E-02 5.5E-02 42
rs2274223
PLCE1
0.620 0.400 10 94306584 missense variant A/G snv 0.28 0.31 40
rs401681
CLPTM1L
0.620 0.640 5 1321972 intron variant C/T snv 0.48 42
rs121913483
FGFR3
0.649 0.560 4 1801841 missense variant C/A;G;T snv 4.2E-06; 1.3E-05 31
rs11549467
HIF1A ; HIF1A-AS3
0.653 0.400 14 61740857 missense variant G/A snv 8.9E-03 7.0E-03 30
rs2233678
PIN1 ; LOC100996288
0.732 0.360 19 9834503 non coding transcript exon variant G/A;C snv 14
rs3813867
LOC107984284 ; CYP2E1
0.732 0.240 10 133526101 intron variant G/A;C snv 13
rs1057520004
TP53
0.752 0.240 17 7674884 missense variant A/C;T snv 12
rs17568
TNFRSF4
0.752 0.320 1 1212042 synonymous variant C/T snv 0.37 0.31 12
rs587782289
TP53
0.752 0.240 17 7674257 missense variant A/C;G;T snv 15
rs1057519911
MAPK1
0.776 0.160 22 21772875 missense variant C/T snv 10
rs1057519824
MET
0.807 0.120 7 116783374 missense variant T/G snv 10
rs7208422
TMC8
0.807 0.120 17 78134494 missense variant A/C;T snv 4.0E-06; 0.51 6
rs1389500636
EGFR
0.827 0.080 7 55156796 missense variant G/A snv 6