DisGeNET - a database of gene-disease associations

List of shared variants

Major Depressive Disorder, C1269683

Disease: Rheumatoid Arthritis

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1217691063	MTHFR	0.330	0.920	1	11796309	missense variant	A/G	snv	4.0E-06	7.0E-06	614
rs397507444	MTHFR	0.405	0.880	1	11794407	missense variant	T/G	snv			306
rs1799983	NOS3	0.430	0.880	7	150999023	missense variant	T/A;G	snv	0.75		246
rs1045642	ABCB1	0.456	0.840	7	87509329	synonymous variant	A/G;T	snv	0.50		214
rs1801133	MTHFR	0.472	0.880	1	11796321	missense variant	G/A	snv	0.31	0.27	174
rs662	PON1	0.485	0.840	7	95308134	missense variant	T/C	snv	0.38	0.42	157
rs1805087	MTR	0.496	0.800	1	236885200	missense variant	A/G	snv	0.20	0.21	135
rs5443	CDCA3 ; GNB3	0.532	0.760	12	6845711	synonymous variant	C/T	snv	0.36	0.44	106
rs2228570	VDR	0.521	0.760	12	47879112	start lost	A/C;G;T	snv	0.63		99
rs2010963	VEGFA	0.542	0.840	6	43770613	5 prime UTR variant	C/G	snv		0.68	82
rs6313	HTR2A	0.562	0.640	13	46895805	synonymous variant	G/A	snv	0.41	0.40	82
rs1061170	CFH	0.561	0.720	1	196690107	missense variant	C/T	snv	0.68	0.64	72
rs953038635	SOD2	0.590	0.800	6	159692720	missense variant	G/A;T	snv	8.0E-06		51
rs1799724	LTA ; TNF	0.600	0.680	6	31574705	upstream gene variant	C/T	snv		8.5E-02	47
rs1256049	ESR2	0.645	0.560	14	64257333	synonymous variant	C/T	snv	6.7E-02	6.3E-02	32
rs6314	HTR2A	0.677	0.360	13	46834899	missense variant	G/A	snv	7.9E-02	9.5E-02	23
rs6198	NR3C1	0.724	0.480	5	143278056	3 prime UTR variant	T/C	snv		0.12	16
rs2855812	MICB	0.790	0.360	6	31504943	intron variant	G/T	snv		0.23	13
rs2227956	HSPA1L	0.752	0.400	6	31810495	missense variant	G/A;C;T	snv	0.87		12
rs33388	NR3C1	0.776	0.360	5	143317730	intron variant	A/T	snv		0.53	12
rs1480380	HLA-DMB	0.763	0.360	6	32945469	intron variant	C/T	snv		0.11	10
rs208294	P2RX7 ; LOC105370032	0.790	0.320	12	121162450	missense variant	T/A;C;G	snv	0.51		9
rs9275524		0.807	0.160	6	32707332	upstream gene variant	T/C	snv		0.58	7
rs389883	CYP21A2 ; STK19	0.827	0.200	6	31979683	non coding transcript exon variant	G/T	snv		0.80	6
rs796590326	P2RX7 ; LOC105370032	0.851	0.200	12	121162449	missense variant	GT/AC	mnv			5