Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs2476601
AP4B1-AS1 ; PTPN22
0.498 0.800 1 113834946 missense variant A/G snv 0.93 0.93 121
rs7903146
TCF7L2
0.554 0.680 10 112998590 intron variant C/G;T snv 93
rs3184504
SH2B3 ; ATXN2
0.572 0.600 12 111446804 missense variant T/A;C;G snv 0.67 92
rs2075650
TOMM40
0.662 0.360 19 44892362 intron variant A/G snv 0.13 0.13 45
rs3087243
CTLA4
0.623 0.720 2 203874196 downstream gene variant G/A snv 0.37 44
rs1990760
IFIH1
0.672 0.480 2 162267541 missense variant C/T snv 0.50 0.45 33
rs405509
APOE
0.667 0.480 19 44905579 upstream gene variant T/G snv 0.58 30
rs2069762
IL2
0.672 0.560 4 122456825 upstream gene variant A/C snv 0.24 23
rs13266634
SLC30A8 ; LOC105375716
0.724 0.480 8 117172544 missense variant C/A;T snv 0.29 23
rs657152
ABO
0.882 0.200 9 133263862 intron variant A/C;T snv 22
rs763361
CD226
0.689 0.520 18 69864406 missense variant T/A;C snv 4.0E-06; 0.52 21
rs11136000
CLU
0.752 0.160 8 27607002 intron variant T/C snv 0.56 19
rs2943641 0.763 0.160 2 226229029 intergenic variant T/C snv 0.67 18
rs3851179 0.752 0.280 11 86157598 downstream gene variant T/C snv 0.70 15
rs157580
TOMM40
0.882 0.160 19 44892009 intron variant G/A snv 0.69 14
rs2292239
ERBB3
0.742 0.480 12 56088396 intron variant T/G snv 0.65 13
rs7528684
FCRL3
0.752 0.560 1 157701026 upstream gene variant A/G snv 0.57 13
rs2304256
TYK2
0.732 0.360 19 10364976 missense variant C/A snv 0.27 0.23 13
rs2542151 0.763 0.480 18 12779948 upstream gene variant G/T snv 0.83 11
rs3024505 0.790 0.320 1 206766559 upstream gene variant G/A snv 0.11 10
rs6859
NECTIN2
0.827 0.120 19 44878777 3 prime UTR variant A/G snv 0.58 10
rs689
INS ; INS-IGF2
0.776 0.280 11 2160994 splice region variant A/T snv 0.73 0.60 9
rs439401 0.851 0.200 19 44911194 non coding transcript exon variant T/C snv 0.68 8
rs10402271 1.000 0.080 19 44825957 downstream gene variant T/G snv 0.28 7
rs5167
APOC2 ; APOC4-APOC2 ; APOC4
1.000 0.040 19 44945208 missense variant T/A;G snv 3.6E-05; 0.39 7