DisGeNET - a database of gene-disease associations

List of shared variants

Primary malignant neoplasm of lung, C1306460

Disease: Liver carcinoma

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs200842482	XRCC1	0.851	0.120	19	43551592	missense variant	C/T	snv	1.6E-05	1.4E-05	4
rs2307181	XRCC1	0.851	0.120	19	43544170	synonymous variant	G/A;C	snv	6.1E-05		4
rs6950683	EZH2	0.851	0.120	7	148884496	upstream gene variant	T/C;G	snv			4
rs228729	PER3	0.827	0.120	1	7785635	intron variant	T/C	snv	0.69	0.69	5
rs2307191	XRCC1	0.827	0.120	19	43553616	missense variant	G/A	snv	1.2E-03	4.8E-03	5
rs72554204	XRCC1	0.827	0.120	19	43546062	missense variant	C/T	snv	1.2E-04	1.3E-04	5
rs9912300	ACLY	0.827	0.120	17	41869011	intron variant	G/A;C;T	snv	4.2E-06; 0.78		5
rs10514231	ATG10	0.807	0.160	5	82011593	intron variant	C/T	snv		0.56	6
rs199613843	XRCC1	0.807	0.160	19	43551609	synonymous variant	C/T	snv	4.0E-06	7.0E-06	6
rs3757328	ZNRD1 ; ZNRD1ASP	0.851	0.120	6	30060575	non coding transcript exon variant	G/A	snv		9.8E-02	6
rs738791	MMP11	0.851	0.120	22	23775338	intron variant	C/T	snv		0.37	6
rs148611340	XRCC1	0.790	0.120	19	43543621	missense variant	G/A;C	snv	4.0E-06; 1.2E-05		7
rs16893344	CCN4	0.807	0.160	8	133194036	intron variant	C/T	snv		0.29	7
rs3212961	ERCC1	0.827	0.200	19	45419065	intron variant	G/A;T	snv	1.9E-04; 0.20		7
rs8191664	NEIL2	0.807	0.200	8	11786044	missense variant	G/A;C;T	snv	4.0E-05; 3.8E-02		7
rs1214285376	XRCC1	0.776	0.200	19	43543490	missense variant	G/T	snv	4.0E-06		8
rs13419896	EPAS1	0.776	0.240	2	46329206	intron variant	G/A	snv		0.10	8
rs2230229	TNFRSF10A	0.807	0.120	8	23191779	missense variant	C/T	snv	0.88	0.86	8
rs62514004	CCN4	0.790	0.240	8	133190246	upstream gene variant	A/G	snv		0.28	8
rs7248320	CARD8 ; CARD8-AS1	0.776	0.160	19	48256972	non coding transcript exon variant	G/A	snv		0.65	8
rs1297812518	LOC112268131 ; KLC1 ; XRCC3	0.763	0.160	14	103707168	missense variant	G/A	snv	1.3E-05	1.4E-05	9
rs132774	XRCC6	0.776	0.280	22	41635949	intron variant	C/G	snv		0.69	9
rs9261204	ZNRD1ASP	0.790	0.200	6	30037466	intron variant	A/G	snv		0.17	9
rs1046282	ERCC1 ; CD3EAP ; PPP1R13L	0.776	0.160	19	45407414	3 prime UTR variant	A/G	snv		0.30	10
rs3212948	ERCC1	0.776	0.160	19	45421104	intron variant	G/C	snv		0.53	10