DisGeNET - a database of gene-disease associations

List of shared variants

Serum total cholesterol measurement, C1445957

Disease: Fatty Liver Disease

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1800562	LOC108783645 ; HFE	0.435	0.880	6	26092913	missense variant	G/A	snv	3.3E-02	3.8E-02	262
rs9939609	FTO	0.559	0.720	16	53786615	intron variant	T/A	snv		0.41	98
rs738409	PNPLA3	0.557	0.720	22	43928847	missense variant	C/G	snv	0.28	0.22	88
rs1260326	GCKR	0.645	0.600	2	27508073	missense variant	T/C;G	snv	0.63; 4.0E-06	0.68	81
rs780094	GCKR	0.658	0.400	2	27518370	intron variant	T/C	snv		0.67	62
rs58542926	TM6SF2	0.630	0.440	19	19268740	missense variant	C/T	snv	6.5E-02	5.8E-02	42
rs738408	PNPLA3	0.925	0.120	22	43928850	synonymous variant	C/T	snv	0.28	0.22	10
rs2126259	LOC157273	1.000		8	9327636	intron variant	T/C	snv		0.87	9
rs1461729	LOC157273	1.000		8	9329732	intron variant	A/G	snv		0.88	5
rs6601299	LOC157273	0.925	0.040	8	9327181	intron variant	T/C	snv		0.88	5
rs2076211	PNPLA3	1.000		22	43933198	intron variant	C/A;T	snv		0.18	3
rs2235776	SAMM50	0.925	0.040	22	43982119	intron variant	C/T	snv		0.24	3