DisGeNET - a database of gene-disease associations

List of shared variants

Serum total cholesterol measurement, C1445957

Disease: Metabolic Syndrome X

Source: GWASDB ×

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs780094	GCKR	0.658	0.400	2	27518370	intron variant	T/C	snv		0.67	24
rs964184	ZPR1	0.716	0.440	11	116778201	3 prime UTR variant	G/C	snv		0.82	12
rs3764261		0.732	0.280	16	56959412	upstream gene variant	C/A	snv		0.31	11
rs102275	TMEM258	0.827	0.320	11	61790331	non coding transcript exon variant	T/C	snv		0.47	10
rs1535	FADS2	0.752	0.240	11	61830500	intron variant	A/G	snv		0.31	10
rs673548	APOB	0.925	0.120	2	21014672	intron variant	G/A;T	snv			10
rs1532085	ALDH1A2	0.882	0.080	15	58391167	intron variant	A/G;T	snv			9
rs174546	FADS1 ; FADS2	0.807	0.200	11	61802358	3 prime UTR variant	C/T	snv		0.28	9
rs9987289	LOC157273	1.000	0.040	8	9325848	non coding transcript exon variant	A/G	snv		0.87	8
rs1883025	ABCA1	0.807	0.120	9	104902020	intron variant	C/T	snv		0.28	7
rs2075290	ZPR1	0.882	0.160	11	116782580	intron variant	C/G;T	snv			7
rs2266788	APOA5 ; ZPR1	0.763	0.440	11	116789970	3 prime UTR variant	G/A	snv		0.93	7
rs12286037	ZPR1	1.000	0.040	11	116781491	intron variant	C/T	snv		0.11	6
rs9939224	CETP	1.000	0.040	16	56968820	intron variant	T/G	snv		0.75	6
rs11820589	BUD13	1.000	0.040	11	116763146	missense variant	G/A	snv	7.8E-02	0.10	5
rs2043085	ALDH1A2	0.827	0.080	15	58388755	intron variant	T/C	snv		0.54	4