DisGeNET - a database of gene-disease associations

List of shared variants

Coronary Artery Disease, C1956346

Disease: High density lipoprotein measurement

Source: GWASCAT ×

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs3184504	SH2B3 ; ATXN2	0.572	0.600	12	111446804	missense variant	T/A;C;G	snv	0.67		61
rs964184	ZPR1	0.716	0.440	11	116778201	3 prime UTR variant	G/C	snv		0.82	35
rs4420638	APOC1	0.708	0.520	19	44919689	downstream gene variant	A/G	snv		0.18	30
rs7412	APOE	0.641	0.640	19	44908822	missense variant	C/T	snv	6.2E-02	7.9E-02	20
rs1333049	CDKN2B-AS1	0.614	0.520	9	22125504	intron variant	G/C	snv		0.41	18
rs17696736	NAA25	0.827	0.240	12	112049014	intron variant	A/G	snv		0.30	12
rs646776	CELSR2	0.752	0.240	1	109275908	downstream gene variant	C/T	snv		0.74	10
rs651821	APOA5	0.851	0.360	11	116791863	5 prime UTR variant	C/T	snv	0.88	0.89	10
rs12740374	CELSR2	0.851	0.040	1	109274968	3 prime UTR variant	G/T	snv		0.22	9
rs459193	C5orf67	0.925	0.120	5	56510924	downstream gene variant	A/G	snv		0.69	9
rs7528419	CELSR2	0.851	0.080	1	109274570	3 prime UTR variant	A/G	snv		0.23	9
rs6905288		0.882	0.120	6	43791136	downstream gene variant	G/A	snv		0.56	8
rs116843064	ANGPTL4	0.776	0.160	19	8364439	missense variant	G/A	snv	1.3E-02	1.5E-02	7
rs2954029		0.807	0.160	8	125478730	intron variant	A/T	snv		0.42	7
rs12423664	FBRSL1	1.000	0.040	12	132493308	intron variant	G/A	snv		0.10	6
rs1800978	ABCA1	1.000	0.040	9	104903697	5 prime UTR variant	C/A;G;T	snv	5.4E-06; 0.14		6
rs2244608	HNF1A ; HNF1A-AS1	0.882	0.160	12	120979185	intron variant	A/G	snv		0.29	6
rs247616		1.000	0.040	16	56955678	intergenic variant	C/T	snv		0.29	6
rs2972146		0.882	0.040	2	226235982	intergenic variant	G/T	snv		0.72	6
rs15285	LPL	1.000	0.040	8	19967156	3 prime UTR variant	C/T	snv		0.36	5
rs895953	SETD1B	1.000	0.040	12	121811142	intron variant	G/T	snv		0.76	5
rs12801636	PCNX3	1.000	0.040	11	65623846	intron variant	G/A	snv		0.25	4
rs1800775	CETP	0.790	0.240	16	56961324	upstream gene variant	C/A;G	snv	0.51; 5.7E-06		4
rs2075291	APOA5 ; ZPR1	0.752	0.400	11	116790676	missense variant	C/A;T	snv	6.4E-03; 4.0E-06		4
rs4766578	ATXN2	0.851	0.200	12	111466567	intron variant	T/A	snv		0.66	4