Disease Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Squamous cell carcinoma of the head and neck
0.500 Biomarker disease BEFREE Human papillomavirus E7 serology and association with p16 immunohistochemistry in squamous cell carcinoma of the head and neck. 26116154 2015
Squamous cell carcinoma of the head and neck
0.500 AlteredExpression disease BEFREE Moreover, BMI1 was highly expressed in both SCCHN and HARM, and BMI1 overexpression was associated with p16 downregulation in SCCHN (P < 0.05). 24302590 2015
Squamous cell carcinoma of the head and neck
0.500 Biomarker disease CTD_human Genomic landscape of cutaneous T cell lymphoma. 26192916 2015
Squamous cell carcinoma of the head and neck
0.500 Biomarker disease CTD_human Promoter region hypermethylation and mRNA expression of MGMT and p16 genes in tissue and blood samples of human premalignant oral lesions and oral squamous cell carcinoma. 24991542 2014
Squamous cell carcinoma of the head and neck
0.500 Biomarker disease BEFREE North-American survey on HPV-DNA and p16 testing for head and neck squamous cell carcinoma. 25096827 2014
Squamous cell carcinoma of the head and neck
0.500 Biomarker disease BEFREE This combination is a more accurate marker for active HPV infection in HNSCC than HPV DNA status or general p16(INK4a)-positive status alone and offers a useful and reliable method for detecting and determining the prognosis of HPV-related HNSCC. 24820457 2014
Squamous cell carcinoma of the head and neck
0.500 Biomarker disease BEFREE The authors assessed the performance characteristics for the Roche cobas 4800 HPV real-time polymerase chain reaction (PCR)-based system (cobas) on cytologic specimens of HNSCC compared with standard methods of in situ hybridization (ISH) for HR-HPV and immunohistochemistry (IHC) for p16 on formalin-fixed, paraffin-embedded (FFPE) tissue. 24259368 2014
Squamous cell carcinoma of the head and neck
0.500 Biomarker disease BEFREE The common oncogenes EGFR, RAS, CCND1, BRAF, and PIK3CA and tumor suppressor genes p53, CDKN2A and NOTCH are discussed for their associations with HNSCC. 23467835 2014
Squamous cell carcinoma of the head and neck
0.500 AlteredExpression disease BEFREE A p16 protein is known to be overexpressed in human papillomavirus-positive head and neck squamous cell carcinoma specimens. p53 is a tumor suppressor protein detectable by immunohistochemistry in carcinogen-associated head and neck squamous cell carcinoma as a result of gene mutations. 24470584 2014
Squamous cell carcinoma of the head and neck
0.500 AlteredExpression disease BEFREE KRAS-variant genotyping was conducted for these samples and 8 HNSCC cell lines. p16 expression was determined in a subset of 26 oropharynx tumors by immunohistochemistry. 25081901 2014
Squamous cell carcinoma of the head and neck
0.500 AlteredExpression disease BEFREE Consistent with the in vitro findings, immunostaining of HNSCC patient samples revealed that high levels p16INK4a expression significantly correlated with decreased cyclin D1 expression. 24473065 2014
Squamous cell carcinoma of the head and neck
0.500 GeneticVariation disease BEFREE PCR-RFLP analysis was used to investigate the p16 (CDKN2A) gene in 96 patients with HNSCC and in 100 individuals without HNSCC. 24633888 2014
Squamous cell carcinoma of the head and neck
0.500 GeneticVariation disease BEFREE Studies have shown recurring alterations at chromosome 9p21 (location of the CDKN2A) and TP53 mutations in the early stages of HNSCC. 22388100 2014
Squamous cell carcinoma of the head and neck
0.500 Biomarker disease BEFREE The results from this analysis suggest that p16 and HPV status have prognostic value in R/M SCCHN and survival benefits of chemotherapy plus cetuximab over chemotherapy alone are independent of tumor p16 and HPV status. 24577117 2014
Squamous cell carcinoma of the head and neck
0.500 Biomarker disease BEFREE In the HPV-negative patients (n=221), heavy alcohol consumption was significantly associated with SCNAs of oncogenes/oncosuppressors that were previously reported to occur frequently in HNSCCs: CDKN2A (q=0.005), FHIT (q=0.005), 11q13 region including CCND1, FADD and CTTN (q=0.005), ERBB2 (HER2) (q=0.009), 3q25-qter including CCNL1, TP63, DCUN1D1 and PIK3CA (q=0.014), and CSMD1 (q=0.019).But, TP53 mutations were not affected. 24278325 2013
Squamous cell carcinoma of the head and neck
0.500 Biomarker disease BEFREE TAC1 methylation in 49/100 (49 %) of HNSCC tumor specimens significantly correlated with p16 methylation (P = 0.010), E-cadherin methylation (P = 0.041), galanin methylation (P = 0.037), and disease-free survival (P = 0.002). 23420374 2013
Squamous cell carcinoma of the head and neck
0.500 Biomarker disease BEFREE Copy number of the ATM gene and chromosome 11 were determined by FISH and HPV status was determined using p16(INK4A) immunohistochemistry in 87 paraffin embedded tumour samples from patients with HNSCC treated with chemoradiation at a single institution. 22410096 2012
Squamous cell carcinoma of the head and neck
0.500 AlteredExpression disease BEFREE Nuclear epidermal growth factor receptor and p16 expression in head and neck squamous cell carcinoma. 23086695 2012
Squamous cell carcinoma of the head and neck
0.500 AlteredExpression disease BEFREE The dose-dependent upregulation of endogenous FOXM1 (isoform B) expression during tumour progression across a panel of normal primary NOK strains (n = 8), dysplasias (n = 5) and head and neck squamous cell carcinoma (HNSCC) cell lines (n = 11) correlated positively with endogenous expressions of HELLS, BMI1, DNMT1 and DNMT3B and negatively with p16(INK4A) and involucrin. 22461910 2012
Squamous cell carcinoma of the head and neck
0.500 Biomarker disease BEFREE We hypothesised p16 staining that considered nuclear localisation might be informative for predicting outcomes in a broader set of HNSCC tumours not limited to the oropharynx, human papilloma virus (HPV) status or by smoking status. 22735904 2012
Squamous cell carcinoma of the head and neck
0.500 AlteredExpression disease BEFREE Expression of p16 and epidermal growth factor receptor (EGFR) has been reported to be associated with survival in HNSCC. 22667340 2012
Squamous cell carcinoma of the head and neck
0.500 AlteredExpression disease BEFREE These include the subjective nature of IHC evaluation, the variable mechanisms of p16 expression in head and neck squamous cell carcinoma, and the lack of scoring and interpretive criteria. 22180304 2012
Squamous cell carcinoma of the head and neck
0.500 AlteredExpression disease BEFREE Forty-five young HNSCC patients (<40 years) were tested for HPV and the expression of p16(ink4a) and p53 in tumor biopsies. 21607949 2012
Squamous cell carcinoma of the head and neck
0.500 Biomarker disease BEFREE Compared with a gold standard HPV-PCR assay, HPV detection by in situ hybridization was less accurate for head and neck squamous cell carcinoma on tissue microarrays than p16 immunohistochemistry. 21572401 2011
Squamous cell carcinoma of the head and neck
0.500 Biomarker disease BEFREE HPV status was determined by p16 immunohistochemistry of 135 HNSCC tumour specimens retrieved from patients treated at the Helsinki University Central Hospital. 21542673 2011